miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11473 3' -56.5 NC_003085.1 + 5030 0.78 0.152407
Target:  5'- aCGACGACGcCCGAGGaGGUGGCG-CUg -3'
miRNA:   3'- cGCUGCUGC-GGCUCCaUCGCUGCuGG- -5'
11473 3' -56.5 NC_003085.1 + 5168 0.67 0.615867
Target:  5'- aGCGGCcauccuGGCGCgGaAGGcagGGCGGCG-CCg -3'
miRNA:   3'- -CGCUG------CUGCGgC-UCCa--UCGCUGCuGG- -5'
11473 3' -56.5 NC_003085.1 + 5494 0.68 0.542447
Target:  5'- cGCGGCGugGggCCGGGccgugagggagcacGUgaacgaggacacaacGGCGGCGGCCa -3'
miRNA:   3'- -CGCUGCugC--GGCUC--------------CA---------------UCGCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 5600 0.67 0.593329
Target:  5'- uGCgGACGAUGCUGAgugacgcGGUGGUgGACGGgCu -3'
miRNA:   3'- -CG-CUGCUGCGGCU-------CCAUCG-CUGCUgG- -5'
11473 3' -56.5 NC_003085.1 + 5879 0.7 0.413121
Target:  5'- uGCGACcucugccguGGCGCCG-GGUcGGUGACGcggGCCu -3'
miRNA:   3'- -CGCUG---------CUGCGGCuCCA-UCGCUGC---UGG- -5'
11473 3' -56.5 NC_003085.1 + 6208 0.69 0.470173
Target:  5'- cGCGugGAguCCGAGG--GCGGgGACCu -3'
miRNA:   3'- -CGCugCUgcGGCUCCauCGCUgCUGG- -5'
11473 3' -56.5 NC_003085.1 + 6810 0.69 0.470173
Target:  5'- gGCGGugcaGugGCUaugGAGGUGgcGCGACGACg -3'
miRNA:   3'- -CGCUg---CugCGG---CUCCAU--CGCUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 7089 0.67 0.590118
Target:  5'- cGCGcucAUGcCGCCGAGGgcaugcgcgagcgGGCGGCGAa- -3'
miRNA:   3'- -CGC---UGCuGCGGCUCCa------------UCGCUGCUgg -5'
11473 3' -56.5 NC_003085.1 + 7277 0.66 0.658891
Target:  5'- aGCGcCucAUGCCGAGGcUGGCuGCGACg -3'
miRNA:   3'- -CGCuGc-UGCGGCUCC-AUCGcUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 7462 0.66 0.658891
Target:  5'- cCGACGcCGCCGGGGcAGgaacaCGGCGAg- -3'
miRNA:   3'- cGCUGCuGCGGCUCCaUC-----GCUGCUgg -5'
11473 3' -56.5 NC_003085.1 + 7538 0.69 0.510353
Target:  5'- cGCG-CGG-GCCGAGGgguGUGAcguCGACCu -3'
miRNA:   3'- -CGCuGCUgCGGCUCCau-CGCU---GCUGG- -5'
11473 3' -56.5 NC_003085.1 + 7645 0.66 0.680298
Target:  5'- aGCGcaucaACGGCGCCGAGuccugGGCcACGAauCCg -3'
miRNA:   3'- -CGC-----UGCUGCGGCUCca---UCGcUGCU--GG- -5'
11473 3' -56.5 NC_003085.1 + 8668 0.68 0.551894
Target:  5'- cGCGugGccuuggGCGCCGGGGUGcCGuCcGCCa -3'
miRNA:   3'- -CGCugC------UGCGGCUCCAUcGCuGcUGG- -5'
11473 3' -56.5 NC_003085.1 + 8798 0.67 0.605122
Target:  5'- cCGGCGGCuCCgcGAGGUugcGCGGCGcaGCCa -3'
miRNA:   3'- cGCUGCUGcGG--CUCCAu--CGCUGC--UGG- -5'
11473 3' -56.5 NC_003085.1 + 9033 0.66 0.695184
Target:  5'- -gGACGGCGgcaggcagcgcgccuCCGaAGGUGGUGAggaguuggaugcCGGCCa -3'
miRNA:   3'- cgCUGCUGC---------------GGC-UCCAUCGCU------------GCUGG- -5'
11473 3' -56.5 NC_003085.1 + 9341 0.68 0.530976
Target:  5'- cGCGGCGGCcaggaccagcaGCCGAGGUcgGGgGACucGCUg -3'
miRNA:   3'- -CGCUGCUG-----------CGGCUCCA--UCgCUGc-UGG- -5'
11473 3' -56.5 NC_003085.1 + 9511 0.66 0.687754
Target:  5'- gGCGGCGcGCGgCGGgucaucggcucccuGGUAGUGcACGACg -3'
miRNA:   3'- -CGCUGC-UGCgGCU--------------CCAUCGC-UGCUGg -5'
11473 3' -56.5 NC_003085.1 + 11341 0.7 0.416791
Target:  5'- gGCGGCGAgccucacggcaccucCGagaCGAuGGUGGCGGCG-CCg -3'
miRNA:   3'- -CGCUGCU---------------GCg--GCU-CCAUCGCUGCuGG- -5'
11473 3' -56.5 NC_003085.1 + 11408 0.66 0.658891
Target:  5'- gGCuGACGcacCGCCGcGGUGGCugcuucuACGGCCc -3'
miRNA:   3'- -CG-CUGCu--GCGGCuCCAUCGc------UGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 11660 0.66 0.70153
Target:  5'- uGCGccGgGugGCCGAGGaGGUGG-GGCUg -3'
miRNA:   3'- -CGC--UgCugCGGCUCCaUCGCUgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.