miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11473 3' -56.5 NC_003085.1 + 3022 0.66 0.680298
Target:  5'- -gGACGACGCCcaGAcGGUGcacGCGAaGGCUg -3'
miRNA:   3'- cgCUGCUGCGG--CU-CCAU---CGCUgCUGG- -5'
11473 3' -56.5 NC_003085.1 + 621 0.66 0.648146
Target:  5'- -gGGCG-CGCuCGAGGcUGGCG-CgGACCu -3'
miRNA:   3'- cgCUGCuGCG-GCUCC-AUCGCuG-CUGG- -5'
11473 3' -56.5 NC_003085.1 + 3088 0.66 0.648146
Target:  5'- cGUGACGA-GCCGcAGGc--CGACGGCg -3'
miRNA:   3'- -CGCUGCUgCGGC-UCCaucGCUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 28602 0.66 0.648146
Target:  5'- -gGAC-ACGCCGGuGGUguGGCGcucgcugcuGCGGCCg -3'
miRNA:   3'- cgCUGcUGCGGCU-CCA--UCGC---------UGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 7277 0.66 0.658891
Target:  5'- aGCGcCucAUGCCGAGGcUGGCuGCGACg -3'
miRNA:   3'- -CGCuGc-UGCGGCUCC-AUCGcUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 25425 0.66 0.648146
Target:  5'- aCGGCaACgGCUGAGcagcacugAGCGGCGGCCg -3'
miRNA:   3'- cGCUGcUG-CGGCUCca------UCGCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 40695 0.66 0.658891
Target:  5'- gGgGACGACGUCcGGGU-GCugGACGcGCCg -3'
miRNA:   3'- -CgCUGCUGCGGcUCCAuCG--CUGC-UGG- -5'
11473 3' -56.5 NC_003085.1 + 20948 0.66 0.669611
Target:  5'- cGCGcGCGucUGCaCGAGGUgcGGUGGCuGGCCu -3'
miRNA:   3'- -CGC-UGCu-GCG-GCUCCA--UCGCUG-CUGG- -5'
11473 3' -56.5 NC_003085.1 + 3583 0.66 0.669611
Target:  5'- cGCGccuCGcUGCCGAGGcGGCGAacUGGCa -3'
miRNA:   3'- -CGCu--GCuGCGGCUCCaUCGCU--GCUGg -5'
11473 3' -56.5 NC_003085.1 + 11408 0.66 0.658891
Target:  5'- gGCuGACGcacCGCCGcGGUGGCugcuucuACGGCCc -3'
miRNA:   3'- -CG-CUGCu--GCGGCuCCAUCGc------UGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 25793 0.66 0.658891
Target:  5'- gGUGGgGACGCCGcugaAGG-AGUGGCcuGCCa -3'
miRNA:   3'- -CGCUgCUGCGGC----UCCaUCGCUGc-UGG- -5'
11473 3' -56.5 NC_003085.1 + 7645 0.66 0.680298
Target:  5'- aGCGcaucaACGGCGCCGAGuccugGGCcACGAauCCg -3'
miRNA:   3'- -CGC-----UGCUGCGGCUCca---UCGcUGCU--GG- -5'
11473 3' -56.5 NC_003085.1 + 3164 0.66 0.64492
Target:  5'- uGgGAUGACGUgGAGGagGGCugacaugggcacucGACGACUc -3'
miRNA:   3'- -CgCUGCUGCGgCUCCa-UCG--------------CUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 14049 0.67 0.605122
Target:  5'- cGCGACGGCGUguccguCGAGGccaucuGCGAgcGCCu -3'
miRNA:   3'- -CGCUGCUGCG------GCUCCau----CGCUgcUGG- -5'
11473 3' -56.5 NC_003085.1 + 22723 0.67 0.605122
Target:  5'- gGCGGCGGCuGCCGAGa-AGCacuCGGCUc -3'
miRNA:   3'- -CGCUGCUG-CGGCUCcaUCGcu-GCUGG- -5'
11473 3' -56.5 NC_003085.1 + 5168 0.67 0.615867
Target:  5'- aGCGGCcauccuGGCGCgGaAGGcagGGCGGCG-CCg -3'
miRNA:   3'- -CGCUG------CUGCGgC-UCCa--UCGCUGCuGG- -5'
11473 3' -56.5 NC_003085.1 + 27650 0.67 0.634159
Target:  5'- aGCGG-GACGCCGcAucgccaccgacuacGGcGGCGACGugCu -3'
miRNA:   3'- -CGCUgCUGCGGC-U--------------CCaUCGCUGCugG- -5'
11473 3' -56.5 NC_003085.1 + 37059 0.67 0.641692
Target:  5'- cGCGcUGGCGCCGAcgacgugcggaugcaGGUGGaCGGCGcGCa -3'
miRNA:   3'- -CGCuGCUGCGGCU---------------CCAUC-GCUGC-UGg -5'
11473 3' -56.5 NC_003085.1 + 17157 0.67 0.626625
Target:  5'- cUGGCG-CGCUGAGGcGGaCGugGcCCa -3'
miRNA:   3'- cGCUGCuGCGGCUCCaUC-GCugCuGG- -5'
11473 3' -56.5 NC_003085.1 + 5600 0.67 0.593329
Target:  5'- uGCgGACGAUGCUGAgugacgcGGUGGUgGACGGgCu -3'
miRNA:   3'- -CG-CUGCUGCGGCU-------CCAUCG-CUGCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.