miRNA display CGI


Results 21 - 40 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11473 3' -56.5 NC_003085.1 + 20930 0.73 0.290801
Target:  5'- gGCGACGACGCCGcGGauucGCccuGACGGuCCa -3'
miRNA:   3'- -CGCUGCUGCGGCuCCau--CG---CUGCU-GG- -5'
11473 3' -56.5 NC_003085.1 + 43210 0.73 0.305336
Target:  5'- aCGGCGGCGUCGuGuaGGCGuCGACCa -3'
miRNA:   3'- cGCUGCUGCGGCuCcaUCGCuGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 19325 0.73 0.305336
Target:  5'- uGCGugGGCuGCUGGGGccGGCGGCGGa- -3'
miRNA:   3'- -CGCugCUG-CGGCUCCa-UCGCUGCUgg -5'
11473 3' -56.5 NC_003085.1 + 22792 0.73 0.312809
Target:  5'- aGCGGCaACgGCCGcucccgcccAGGaGGCGACGGCCc -3'
miRNA:   3'- -CGCUGcUG-CGGC---------UCCaUCGCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 33216 0.72 0.344082
Target:  5'- gGCGGCGGCGCagcaCGAGGaUGaCGACG-CCa -3'
miRNA:   3'- -CGCUGCUGCG----GCUCC-AUcGCUGCuGG- -5'
11473 3' -56.5 NC_003085.1 + 31129 0.72 0.351421
Target:  5'- aGCaGCG-CGCCGAGuucgugcGUAGCG-CGGCCa -3'
miRNA:   3'- -CGcUGCuGCGGCUC-------CAUCGCuGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 13792 0.72 0.352243
Target:  5'- gGCGAgcgUGACGCCagucugcgugGAGGUGGCgccauGACGugCa -3'
miRNA:   3'- -CGCU---GCUGCGG----------CUCCAUCG-----CUGCugG- -5'
11473 3' -56.5 NC_003085.1 + 552 0.72 0.352243
Target:  5'- gGCGaACGGCG-CGAGGcGGCG-CGGCUg -3'
miRNA:   3'- -CGC-UGCUGCgGCUCCaUCGCuGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 36453 0.72 0.359705
Target:  5'- -gGGCGGCGCCucauggcGAGGUAGUgccacuGGCGGCUu -3'
miRNA:   3'- cgCUGCUGCGG-------CUCCAUCG------CUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 47954 0.71 0.36643
Target:  5'- cUGGCGGCcgugaggcgcaccgGCCGAGGcUGGCGACGGu- -3'
miRNA:   3'- cGCUGCUG--------------CGGCUCC-AUCGCUGCUgg -5'
11473 3' -56.5 NC_003085.1 + 33573 0.71 0.368974
Target:  5'- cGCGGCGACauguuGCCGAagcGGUGGCaugaaGCGGCUu -3'
miRNA:   3'- -CGCUGCUG-----CGGCU---CCAUCGc----UGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 27094 0.71 0.377541
Target:  5'- -aGACGACGuCCGAGGgcaucuGgGACGuuuCCg -3'
miRNA:   3'- cgCUGCUGC-GGCUCCau----CgCUGCu--GG- -5'
11473 3' -56.5 NC_003085.1 + 46228 0.71 0.377541
Target:  5'- uGUGugGGCcgGCCcAGGUAGCGcCGGCa -3'
miRNA:   3'- -CGCugCUG--CGGcUCCAUCGCuGCUGg -5'
11473 3' -56.5 NC_003085.1 + 42729 0.71 0.377541
Target:  5'- gGCGugGGCGUCGGGGcgaugcgGGCgcggugGACGGCa -3'
miRNA:   3'- -CGCugCUGCGGCUCCa------UCG------CUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 44340 0.71 0.377541
Target:  5'- gGCGGCGACGC--GGG-AGagGGCGGCCa -3'
miRNA:   3'- -CGCUGCUGCGgcUCCaUCg-CUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 22186 0.71 0.386241
Target:  5'- aUGGCGAaggugcagGCCGAGGU-GCagGGCGACCu -3'
miRNA:   3'- cGCUGCUg-------CGGCUCCAuCG--CUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 1317 0.71 0.394183
Target:  5'- cGCGACGccGCGCUggagGAGGcagcccagacugcUGGCGACGuuGCCg -3'
miRNA:   3'- -CGCUGC--UGCGG----CUCC-------------AUCGCUGC--UGG- -5'
11473 3' -56.5 NC_003085.1 + 21112 0.71 0.404033
Target:  5'- aCGGCGGUGCCGcGGaUGGCGAUaGCCa -3'
miRNA:   3'- cGCUGCUGCGGCuCC-AUCGCUGcUGG- -5'
11473 3' -56.5 NC_003085.1 + 43070 0.71 0.404033
Target:  5'- uGCGugGAgacacgGCCGAGGaAGaaACGACCg -3'
miRNA:   3'- -CGCugCUg-----CGGCUCCaUCgcUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 5879 0.7 0.413121
Target:  5'- uGCGACcucugccguGGCGCCG-GGUcGGUGACGcggGCCu -3'
miRNA:   3'- -CGCUG---------CUGCGGCuCCA-UCGCUGC---UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.