miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11473 3' -56.5 NC_003085.1 + 19743 1.14 0.000399
Target:  5'- gGCGACGACGCCGAGGUAGCGACGACCa -3'
miRNA:   3'- -CGCUGCUGCGGCUCCAUCGCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 47365 0.9 0.021103
Target:  5'- cCGAUGGCGCCGAGGU-GCGGCGGCUg -3'
miRNA:   3'- cGCUGCUGCGGCUCCAuCGCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 22763 0.83 0.061024
Target:  5'- cCGACGACGCCcgccgcGGUGGCGACGGCa -3'
miRNA:   3'- cGCUGCUGCGGcu----CCAUCGCUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 16499 0.79 0.116099
Target:  5'- cGCuGACGGCGCCGAGGaagGGUGuCGGCa -3'
miRNA:   3'- -CG-CUGCUGCGGCUCCa--UCGCuGCUGg -5'
11473 3' -56.5 NC_003085.1 + 29216 0.78 0.140547
Target:  5'- aGCGACuGCGCCaccugggcgaAGGUGGCGACGuACCg -3'
miRNA:   3'- -CGCUGcUGCGGc---------UCCAUCGCUGC-UGG- -5'
11473 3' -56.5 NC_003085.1 + 5030 0.78 0.152407
Target:  5'- aCGACGACGcCCGAGGaGGUGGCG-CUg -3'
miRNA:   3'- cGCUGCUGC-GGCUCCaUCGCUGCuGG- -5'
11473 3' -56.5 NC_003085.1 + 25794 0.78 0.152407
Target:  5'- uGCGugGACGCCuGGGcGGCGuucgccugcGCGGCCu -3'
miRNA:   3'- -CGCugCUGCGGcUCCaUCGC---------UGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 25315 0.78 0.152407
Target:  5'- -gGACGACGCCGuGGUGGCcacCGACa -3'
miRNA:   3'- cgCUGCUGCGGCuCCAUCGcu-GCUGg -5'
11473 3' -56.5 NC_003085.1 + 12684 0.76 0.193592
Target:  5'- aUGAUGACGCCGAGG-AGUacgccGACGGCg -3'
miRNA:   3'- cGCUGCUGCGGCUCCaUCG-----CUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 3692 0.75 0.209354
Target:  5'- gGCGAguccUGACGCCGcguccggugcuGGUGGUGACGACg -3'
miRNA:   3'- -CGCU----GCUGCGGCu----------CCAUCGCUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 20095 0.75 0.220468
Target:  5'- uGUGACG-UGCCGcAGGUGGCGGggcuggagucCGGCCu -3'
miRNA:   3'- -CGCUGCuGCGGC-UCCAUCGCU----------GCUGG- -5'
11473 3' -56.5 NC_003085.1 + 14906 0.75 0.220468
Target:  5'- uGCGGCGcACGCgGGccggcuGGUGGCGcucGCGGCCg -3'
miRNA:   3'- -CGCUGC-UGCGgCU------CCAUCGC---UGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 2786 0.75 0.226211
Target:  5'- aGCGGCGGCGCuCcAGGcGGCGGCGaagcGCCu -3'
miRNA:   3'- -CGCUGCUGCG-GcUCCaUCGCUGC----UGG- -5'
11473 3' -56.5 NC_003085.1 + 12292 0.75 0.23208
Target:  5'- cGCGACGGCGCgGugguccgcuGGGUuGCGGCGcacACCg -3'
miRNA:   3'- -CGCUGCUGCGgC---------UCCAuCGCUGC---UGG- -5'
11473 3' -56.5 NC_003085.1 + 39011 0.74 0.244204
Target:  5'- cGCuACGuCGCgGAGGaGGCGACGGCa -3'
miRNA:   3'- -CGcUGCuGCGgCUCCaUCGCUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 3788 0.74 0.26337
Target:  5'- cGCGGCugacgGACGCCGA---AGCGGCGACg -3'
miRNA:   3'- -CGCUG-----CUGCGGCUccaUCGCUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 3944 0.74 0.270025
Target:  5'- cGCGGCGAUGuugucgcggcCCGGGGaUGGagccaGACGGCCg -3'
miRNA:   3'- -CGCUGCUGC----------GGCUCC-AUCg----CUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 39878 0.73 0.276814
Target:  5'- gGCGGagaGACGCCGGugcucGGcGGCGGCaGGCCa -3'
miRNA:   3'- -CGCUg--CUGCGGCU-----CCaUCGCUG-CUGG- -5'
11473 3' -56.5 NC_003085.1 + 25166 0.73 0.276814
Target:  5'- gGCGAcCGugGCCuGGuggcGGUGGCGAUGAgCg -3'
miRNA:   3'- -CGCU-GCugCGG-CU----CCAUCGCUGCUgG- -5'
11473 3' -56.5 NC_003085.1 + 20930 0.73 0.290801
Target:  5'- gGCGACGACGCCGcGGauucGCccuGACGGuCCa -3'
miRNA:   3'- -CGCUGCUGCGGCuCCau--CG---CUGCU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.