miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11473 3' -56.5 NC_003085.1 + 45981 0.7 0.450696
Target:  5'- gGCGGCaGAUGCgCGccucuccccacaGGGUGaCGACGGCCg -3'
miRNA:   3'- -CGCUG-CUGCG-GC------------UCCAUcGCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 27094 0.71 0.377541
Target:  5'- -aGACGACGuCCGAGGgcaucuGgGACGuuuCCg -3'
miRNA:   3'- cgCUGCUGC-GGCUCCau----CgCUGCu--GG- -5'
11473 3' -56.5 NC_003085.1 + 42729 0.71 0.377541
Target:  5'- gGCGugGGCGUCGGGGcgaugcgGGCgcggugGACGGCa -3'
miRNA:   3'- -CGCugCUGCGGCUCCa------UCG------CUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 44340 0.71 0.377541
Target:  5'- gGCGGCGACGC--GGG-AGagGGCGGCCa -3'
miRNA:   3'- -CGCUGCUGCGgcUCCaUCg-CUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 22186 0.71 0.386241
Target:  5'- aUGGCGAaggugcagGCCGAGGU-GCagGGCGACCu -3'
miRNA:   3'- cGCUGCUg-------CGGCUCCAuCG--CUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 43070 0.71 0.404033
Target:  5'- uGCGugGAgacacgGCCGAGGaAGaaACGACCg -3'
miRNA:   3'- -CGCugCUg-----CGGCUCCaUCgcUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 42098 0.7 0.431669
Target:  5'- uGCGGCuccgUGUCGAGGUGGCggagGACGGCa -3'
miRNA:   3'- -CGCUGcu--GCGGCUCCAUCG----CUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 11778 0.7 0.441124
Target:  5'- aCGGCGGCGCCGcgcuccGGgcGUGuCGGCUg -3'
miRNA:   3'- cGCUGCUGCGGCu-----CCauCGCuGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 16567 0.7 0.450696
Target:  5'- uGCGugG-CGCCcGGccacuGCGACGACCc -3'
miRNA:   3'- -CGCugCuGCGGcUCcau--CGCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 36453 0.72 0.359705
Target:  5'- -gGGCGGCGCCucauggcGAGGUAGUgccacuGGCGGCUu -3'
miRNA:   3'- cgCUGCUGCGG-------CUCCAUCG------CUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 13792 0.72 0.352243
Target:  5'- gGCGAgcgUGACGCCagucugcgugGAGGUGGCgccauGACGugCa -3'
miRNA:   3'- -CGCU---GCUGCGG----------CUCCAUCG-----CUGCugG- -5'
11473 3' -56.5 NC_003085.1 + 31129 0.72 0.351421
Target:  5'- aGCaGCG-CGCCGAGuucgugcGUAGCG-CGGCCa -3'
miRNA:   3'- -CGcUGCuGCGGCUC-------CAUCGCuGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 16499 0.79 0.116099
Target:  5'- cGCuGACGGCGCCGAGGaagGGUGuCGGCa -3'
miRNA:   3'- -CG-CUGCUGCGGCUCCa--UCGCuGCUGg -5'
11473 3' -56.5 NC_003085.1 + 25315 0.78 0.152407
Target:  5'- -gGACGACGCCGuGGUGGCcacCGACa -3'
miRNA:   3'- cgCUGCUGCGGCuCCAUCGcu-GCUGg -5'
11473 3' -56.5 NC_003085.1 + 20095 0.75 0.220468
Target:  5'- uGUGACG-UGCCGcAGGUGGCGGggcuggagucCGGCCu -3'
miRNA:   3'- -CGCUGCuGCGGC-UCCAUCGCU----------GCUGG- -5'
11473 3' -56.5 NC_003085.1 + 12292 0.75 0.23208
Target:  5'- cGCGACGGCGCgGugguccgcuGGGUuGCGGCGcacACCg -3'
miRNA:   3'- -CGCUGCUGCGgC---------UCCAuCGCUGC---UGG- -5'
11473 3' -56.5 NC_003085.1 + 39011 0.74 0.244204
Target:  5'- cGCuACGuCGCgGAGGaGGCGACGGCa -3'
miRNA:   3'- -CGcUGCuGCGgCUCCaUCGCUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 3944 0.74 0.270025
Target:  5'- cGCGGCGAUGuugucgcggcCCGGGGaUGGagccaGACGGCCg -3'
miRNA:   3'- -CGCUGCUGC----------GGCUCC-AUCg----CUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 25166 0.73 0.276814
Target:  5'- gGCGAcCGugGCCuGGuggcGGUGGCGAUGAgCg -3'
miRNA:   3'- -CGCU-GCugCGG-CU----CCAUCGCUGCUgG- -5'
11473 3' -56.5 NC_003085.1 + 22792 0.73 0.312809
Target:  5'- aGCGGCaACgGCCGcucccgcccAGGaGGCGACGGCCc -3'
miRNA:   3'- -CGCUGcUG-CGGC---------UCCaUCGCUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.