miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11473 3' -56.5 NC_003085.1 + 180 0.67 0.615867
Target:  5'- cGCGACGcaGCaGCCacagGGGGUGGCcAUGACg -3'
miRNA:   3'- -CGCUGC--UG-CGG----CUCCAUCGcUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 534 0.7 0.458434
Target:  5'- cGUGACGACGUucggcagccagggCGGGGUGGCcgucgaagugcagGGCGAgCCc -3'
miRNA:   3'- -CGCUGCUGCG-------------GCUCCAUCG-------------CUGCU-GG- -5'
11473 3' -56.5 NC_003085.1 + 552 0.72 0.352243
Target:  5'- gGCGaACGGCG-CGAGGcGGCG-CGGCUg -3'
miRNA:   3'- -CGC-UGCUGCgGCUCCaUCGCuGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 621 0.66 0.648146
Target:  5'- -gGGCG-CGCuCGAGGcUGGCG-CgGACCu -3'
miRNA:   3'- cgCUGCuGCG-GCUCC-AUCGCuG-CUGG- -5'
11473 3' -56.5 NC_003085.1 + 1317 0.71 0.394183
Target:  5'- cGCGACGccGCGCUggagGAGGcagcccagacugcUGGCGACGuuGCCg -3'
miRNA:   3'- -CGCUGC--UGCGG----CUCC-------------AUCGCUGC--UGG- -5'
11473 3' -56.5 NC_003085.1 + 1333 0.69 0.480072
Target:  5'- uGCGAUGGCGCUGGaGUAcgGACGGCUu -3'
miRNA:   3'- -CGCUGCUGCGGCUcCAUcgCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 2393 0.67 0.626625
Target:  5'- cGUGGcCGAcauggacacCGCCGAgcuGGUGGUGACGAa- -3'
miRNA:   3'- -CGCU-GCU---------GCGGCU---CCAUCGCUGCUgg -5'
11473 3' -56.5 NC_003085.1 + 2500 0.66 0.669611
Target:  5'- -aGGCGugGCUGAcggacGGUGugcccGCGuCGGCCc -3'
miRNA:   3'- cgCUGCugCGGCU-----CCAU-----CGCuGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 2786 0.75 0.226211
Target:  5'- aGCGGCGGCGCuCcAGGcGGCGGCGaagcGCCu -3'
miRNA:   3'- -CGCUGCUGCG-GcUCCaUCGCUGC----UGG- -5'
11473 3' -56.5 NC_003085.1 + 3022 0.66 0.680298
Target:  5'- -gGACGACGCCcaGAcGGUGcacGCGAaGGCUg -3'
miRNA:   3'- cgCUGCUGCGG--CU-CCAU---CGCUgCUGG- -5'
11473 3' -56.5 NC_003085.1 + 3088 0.66 0.648146
Target:  5'- cGUGACGA-GCCGcAGGc--CGACGGCg -3'
miRNA:   3'- -CGCUGCUgCGGC-UCCaucGCUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 3164 0.66 0.64492
Target:  5'- uGgGAUGACGUgGAGGagGGCugacaugggcacucGACGACUc -3'
miRNA:   3'- -CgCUGCUGCGgCUCCa-UCG--------------CUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 3382 0.67 0.615867
Target:  5'- aGCGGCu-CGCCGucGGUaAGCG-CGACg -3'
miRNA:   3'- -CGCUGcuGCGGCu-CCA-UCGCuGCUGg -5'
11473 3' -56.5 NC_003085.1 + 3455 0.66 0.70153
Target:  5'- gGCGACcacguACGCCGAGcaccaucacGGCGACGuCUg -3'
miRNA:   3'- -CGCUGc----UGCGGCUCca-------UCGCUGCuGG- -5'
11473 3' -56.5 NC_003085.1 + 3583 0.66 0.669611
Target:  5'- cGCGccuCGcUGCCGAGGcGGCGAacUGGCa -3'
miRNA:   3'- -CGCu--GCuGCGGCUCCaUCGCU--GCUGg -5'
11473 3' -56.5 NC_003085.1 + 3663 0.67 0.626625
Target:  5'- gGUGGCGAgGuuGgAGGcAGgGACGGCg -3'
miRNA:   3'- -CGCUGCUgCggC-UCCaUCgCUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 3692 0.75 0.209354
Target:  5'- gGCGAguccUGACGCCGcguccggugcuGGUGGUGACGACg -3'
miRNA:   3'- -CGCU----GCUGCGGCu----------CCAUCGCUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 3788 0.74 0.26337
Target:  5'- cGCGGCugacgGACGCCGA---AGCGGCGACg -3'
miRNA:   3'- -CGCUG-----CUGCGGCUccaUCGCUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 3944 0.74 0.270025
Target:  5'- cGCGGCGAUGuugucgcggcCCGGGGaUGGagccaGACGGCCg -3'
miRNA:   3'- -CGCUGCUGC----------GGCUCC-AUCg----CUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 4473 0.66 0.668541
Target:  5'- cGCGACGACGagGGcacGGUgacgaagcgcgcuGGCGACugGGCCa -3'
miRNA:   3'- -CGCUGCUGCggCU---CCA-------------UCGCUG--CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.