miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11473 3' -56.5 NC_003085.1 + 48774 0.69 0.490071
Target:  5'- cGCGccCGAgGCCGgacgcgggacAGGUGGCcGGCGACg -3'
miRNA:   3'- -CGCu-GCUgCGGC----------UCCAUCG-CUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 48736 0.66 0.658891
Target:  5'- aGCGGaGGCGaCUGAGGcgcGgGugGACCu -3'
miRNA:   3'- -CGCUgCUGC-GGCUCCau-CgCugCUGG- -5'
11473 3' -56.5 NC_003085.1 + 48255 0.66 0.700474
Target:  5'- aGCG-CGGCGCCGGGGUgagguuggucaauGGuCGcccCGGCa -3'
miRNA:   3'- -CGCuGCUGCGGCUCCA-------------UC-GCu--GCUGg -5'
11473 3' -56.5 NC_003085.1 + 48186 0.69 0.480072
Target:  5'- uCGGCG-CGCaCGAGGUGGCccaccuugGAuuCGGCCa -3'
miRNA:   3'- cGCUGCuGCG-GCUCCAUCG--------CU--GCUGG- -5'
11473 3' -56.5 NC_003085.1 + 47954 0.71 0.36643
Target:  5'- cUGGCGGCcgugaggcgcaccgGCCGAGGcUGGCGACGGu- -3'
miRNA:   3'- cGCUGCUG--------------CGGCUCC-AUCGCUGCUgg -5'
11473 3' -56.5 NC_003085.1 + 47799 0.73 0.290801
Target:  5'- gGUGACGuCGCCGcguuGGUAGUaggGACGGCa -3'
miRNA:   3'- -CGCUGCuGCGGCu---CCAUCG---CUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 47365 0.9 0.021103
Target:  5'- cCGAUGGCGCCGAGGU-GCGGCGGCUg -3'
miRNA:   3'- cGCUGCUGCGGCUCCAuCGCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 46228 0.71 0.377541
Target:  5'- uGUGugGGCcgGCCcAGGUAGCGcCGGCa -3'
miRNA:   3'- -CGCugCUG--CGGcUCCAUCGCuGCUGg -5'
11473 3' -56.5 NC_003085.1 + 46109 0.67 0.622321
Target:  5'- -gGGCucacgGGCGUCGGGGagcgucgucuguGCGGCGACCa -3'
miRNA:   3'- cgCUG-----CUGCGGCUCCau----------CGCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 45981 0.7 0.450696
Target:  5'- gGCGGCaGAUGCgCGccucuccccacaGGGUGaCGACGGCCg -3'
miRNA:   3'- -CGCUG-CUGCG-GC------------UCCAUcGCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 44340 0.71 0.377541
Target:  5'- gGCGGCGACGC--GGG-AGagGGCGGCCa -3'
miRNA:   3'- -CGCUGCUGCGgcUCCaUCg-CUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 43519 0.69 0.500166
Target:  5'- gGCGuggacgggaACGGCGCCGaAGGcGGCG-CGuCCa -3'
miRNA:   3'- -CGC---------UGCUGCGGC-UCCaUCGCuGCuGG- -5'
11473 3' -56.5 NC_003085.1 + 43210 0.73 0.305336
Target:  5'- aCGGCGGCGUCGuGuaGGCGuCGACCa -3'
miRNA:   3'- cGCUGCUGCGGCuCcaUCGCuGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 43070 0.71 0.404033
Target:  5'- uGCGugGAgacacgGCCGAGGaAGaaACGACCg -3'
miRNA:   3'- -CGCugCUg-----CGGCUCCaUCgcUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 42888 0.66 0.690941
Target:  5'- uCGAgggUGAgGCCGAGGUccugcGCGugGAuuCCa -3'
miRNA:   3'- cGCU---GCUgCGGCUCCAu----CGCugCU--GG- -5'
11473 3' -56.5 NC_003085.1 + 42729 0.71 0.377541
Target:  5'- gGCGugGGCGUCGGGGcgaugcgGGCgcggugGACGGCa -3'
miRNA:   3'- -CGCugCUGCGGCUCCa------UCG------CUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 42155 0.66 0.695184
Target:  5'- cGCGAUGGCcgucggagacuucccGUCGAGcuUGGCGGCGgugcGCCa -3'
miRNA:   3'- -CGCUGCUG---------------CGGCUCc-AUCGCUGC----UGG- -5'
11473 3' -56.5 NC_003085.1 + 42098 0.7 0.431669
Target:  5'- uGCGGCuccgUGUCGAGGUGGCggagGACGGCa -3'
miRNA:   3'- -CGCUGcu--GCGGCUCCAUCG----CUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 40839 0.66 0.695184
Target:  5'- cUGACGGCgGCCgggcuggccaaccugGAGGccAGCGugGACa -3'
miRNA:   3'- cGCUGCUG-CGG---------------CUCCa-UCGCugCUGg -5'
11473 3' -56.5 NC_003085.1 + 40695 0.66 0.658891
Target:  5'- gGgGACGACGUCcGGGU-GCugGACGcGCCg -3'
miRNA:   3'- -CgCUGCUGCGGcUCCAuCG--CUGC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.