miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11473 3' -56.5 NC_003085.1 + 25793 0.66 0.658891
Target:  5'- gGUGGgGACGCCGcugaAGG-AGUGGCcuGCCa -3'
miRNA:   3'- -CGCUgCUGCGGC----UCCaUCGCUGc-UGG- -5'
11473 3' -56.5 NC_003085.1 + 7645 0.66 0.680298
Target:  5'- aGCGcaucaACGGCGCCGAGuccugGGCcACGAauCCg -3'
miRNA:   3'- -CGC-----UGCUGCGGCUCca---UCGcUGCU--GG- -5'
11473 3' -56.5 NC_003085.1 + 3583 0.66 0.669611
Target:  5'- cGCGccuCGcUGCCGAGGcGGCGAacUGGCa -3'
miRNA:   3'- -CGCu--GCuGCGGCUCCaUCGCU--GCUGg -5'
11473 3' -56.5 NC_003085.1 + 40695 0.66 0.658891
Target:  5'- gGgGACGACGUCcGGGU-GCugGACGcGCCg -3'
miRNA:   3'- -CgCUGCUGCGGcUCCAuCG--CUGC-UGG- -5'
11473 3' -56.5 NC_003085.1 + 20948 0.66 0.669611
Target:  5'- cGCGcGCGucUGCaCGAGGUgcGGUGGCuGGCCu -3'
miRNA:   3'- -CGC-UGCu-GCG-GCUCCA--UCGCUG-CUGG- -5'
11473 3' -56.5 NC_003085.1 + 3022 0.66 0.680298
Target:  5'- -gGACGACGCCcaGAcGGUGcacGCGAaGGCUg -3'
miRNA:   3'- cgCUGCUGCGG--CU-CCAU---CGCUgCUGG- -5'
11473 3' -56.5 NC_003085.1 + 3455 0.66 0.70153
Target:  5'- gGCGACcacguACGCCGAGcaccaucacGGCGACGuCUg -3'
miRNA:   3'- -CGCUGc----UGCGGCUCca-------UCGCUGCuGG- -5'
11473 3' -56.5 NC_003085.1 + 9033 0.66 0.695184
Target:  5'- -gGACGGCGgcaggcagcgcgccuCCGaAGGUGGUGAggaguuggaugcCGGCCa -3'
miRNA:   3'- cgCUGCUGC---------------GGC-UCCAUCGCU------------GCUGG- -5'
11473 3' -56.5 NC_003085.1 + 40839 0.66 0.695184
Target:  5'- cUGACGGCgGCCgggcuggccaaccugGAGGccAGCGugGACa -3'
miRNA:   3'- cGCUGCUG-CGG---------------CUCCa-UCGCugCUGg -5'
11473 3' -56.5 NC_003085.1 + 42888 0.66 0.690941
Target:  5'- uCGAgggUGAgGCCGAGGUccugcGCGugGAuuCCa -3'
miRNA:   3'- cGCU---GCUgCGGCUCCAu----CGCugCU--GG- -5'
11473 3' -56.5 NC_003085.1 + 621 0.66 0.648146
Target:  5'- -gGGCG-CGCuCGAGGcUGGCG-CgGACCu -3'
miRNA:   3'- cgCUGCuGCG-GCUCC-AUCGCuG-CUGG- -5'
11473 3' -56.5 NC_003085.1 + 48255 0.66 0.700474
Target:  5'- aGCG-CGGCGCCGGGGUgagguuggucaauGGuCGcccCGGCa -3'
miRNA:   3'- -CGCuGCUGCGGCUCCA-------------UC-GCu--GCUGg -5'
11473 3' -56.5 NC_003085.1 + 35722 0.66 0.680298
Target:  5'- gGCGGCcACGgCGAGGgcagGGUGGcCGAUg -3'
miRNA:   3'- -CGCUGcUGCgGCUCCa---UCGCU-GCUGg -5'
11473 3' -56.5 NC_003085.1 + 42155 0.66 0.695184
Target:  5'- cGCGAUGGCcgucggagacuucccGUCGAGcuUGGCGGCGgugcGCCa -3'
miRNA:   3'- -CGCUGCUG---------------CGGCUCc-AUCGCUGC----UGG- -5'
11473 3' -56.5 NC_003085.1 + 39725 0.66 0.690941
Target:  5'- cGCGcccuggacuccAUGACGCCGAGGacacacaGGCGuucCGGCg -3'
miRNA:   3'- -CGC-----------UGCUGCGGCUCCa------UCGCu--GCUGg -5'
11473 3' -56.5 NC_003085.1 + 11408 0.66 0.658891
Target:  5'- gGCuGACGcacCGCCGcGGUGGCugcuucuACGGCCc -3'
miRNA:   3'- -CG-CUGCu--GCGGCuCCAUCGc------UGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 25425 0.66 0.648146
Target:  5'- aCGGCaACgGCUGAGcagcacugAGCGGCGGCCg -3'
miRNA:   3'- cGCUGcUG-CGGCUCca------UCGCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 37143 0.66 0.70153
Target:  5'- aCGGCGACGgCGGGcacccUGGCGGUGACg -3'
miRNA:   3'- cGCUGCUGCgGCUCc----AUCGCUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 28602 0.66 0.648146
Target:  5'- -gGAC-ACGCCGGuGGUguGGCGcucgcugcuGCGGCCg -3'
miRNA:   3'- cgCUGcUGCGGCU-CCA--UCGC---------UGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 11660 0.66 0.70153
Target:  5'- uGCGccGgGugGCCGAGGaGGUGG-GGCUg -3'
miRNA:   3'- -CGC--UgCugCGGCUCCaUCGCUgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.