miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11473 3' -56.5 NC_003085.1 + 42155 0.66 0.695184
Target:  5'- cGCGAUGGCcgucggagacuucccGUCGAGcuUGGCGGCGgugcGCCa -3'
miRNA:   3'- -CGCUGCUG---------------CGGCUCc-AUCGCUGC----UGG- -5'
11473 3' -56.5 NC_003085.1 + 3663 0.67 0.626625
Target:  5'- gGUGGCGAgGuuGgAGGcAGgGACGGCg -3'
miRNA:   3'- -CGCUGCUgCggC-UCCaUCgCUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 46109 0.67 0.622321
Target:  5'- -gGGCucacgGGCGUCGGGGagcgucgucuguGCGGCGACCa -3'
miRNA:   3'- cgCUG-----CUGCGGCUCCau----------CGCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 19743 1.14 0.000399
Target:  5'- gGCGACGACGCCGAGGUAGCGACGACCa -3'
miRNA:   3'- -CGCUGCUGCGGCUCCAUCGCUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 19350 0.66 0.690941
Target:  5'- -nGAUGGCGuCCGu-GUAGaggaGGCGGCCg -3'
miRNA:   3'- cgCUGCUGC-GGCucCAUCg---CUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 18079 0.66 0.689879
Target:  5'- uGCGGCuGGCcucuuugcgGCCGGGGUcgagcuucuugucGGCGcgggcgggACGGCCg -3'
miRNA:   3'- -CGCUG-CUG---------CGGCUCCA-------------UCGC--------UGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 16735 0.66 0.669611
Target:  5'- uGCGAUGGCauccUCGGuGUGGCGACGcACUg -3'
miRNA:   3'- -CGCUGCUGc---GGCUcCAUCGCUGC-UGG- -5'
11473 3' -56.5 NC_003085.1 + 12746 0.66 0.669611
Target:  5'- cCGA--GCGuCUGAGGgGGCGugGACUa -3'
miRNA:   3'- cGCUgcUGC-GGCUCCaUCGCugCUGG- -5'
11473 3' -56.5 NC_003085.1 + 7462 0.66 0.658891
Target:  5'- cCGACGcCGCCGGGGcAGgaacaCGGCGAg- -3'
miRNA:   3'- cGCUGCuGCGGCUCCaUC-----GCUGCUgg -5'
11473 3' -56.5 NC_003085.1 + 16100 0.67 0.636312
Target:  5'- aCGAUGACGCUGAagggcgacauccuGGaGGuCGACGcCCg -3'
miRNA:   3'- cGCUGCUGCGGCU-------------CCaUC-GCUGCuGG- -5'
11473 3' -56.5 NC_003085.1 + 7277 0.66 0.658891
Target:  5'- aGCGcCucAUGCCGAGGcUGGCuGCGACg -3'
miRNA:   3'- -CGCuGc-UGCGGCUCC-AUCGcUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 4473 0.66 0.668541
Target:  5'- cGCGACGACGagGGcacGGUgacgaagcgcgcuGGCGACugGGCCa -3'
miRNA:   3'- -CGCUGCUGCggCU---CCA-------------UCGCUG--CUGG- -5'
11473 3' -56.5 NC_003085.1 + 9033 0.66 0.695184
Target:  5'- -gGACGGCGgcaggcagcgcgccuCCGaAGGUGGUGAggaguuggaugcCGGCCa -3'
miRNA:   3'- cgCUGCUGC---------------GGC-UCCAUCGCU------------GCUGG- -5'
11473 3' -56.5 NC_003085.1 + 3088 0.66 0.648146
Target:  5'- cGUGACGA-GCCGcAGGc--CGACGGCg -3'
miRNA:   3'- -CGCUGCUgCGGC-UCCaucGCUGCUGg -5'
11473 3' -56.5 NC_003085.1 + 39725 0.66 0.690941
Target:  5'- cGCGcccuggacuccAUGACGCCGAGGacacacaGGCGuucCGGCg -3'
miRNA:   3'- -CGC-----------UGCUGCGGCUCCa------UCGCu--GCUGg -5'
11473 3' -56.5 NC_003085.1 + 2500 0.66 0.669611
Target:  5'- -aGGCGugGCUGAcggacGGUGugcccGCGuCGGCCc -3'
miRNA:   3'- cgCUGCugCGGCU-----CCAU-----CGCuGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 3164 0.66 0.64492
Target:  5'- uGgGAUGACGUgGAGGagGGCugacaugggcacucGACGACUc -3'
miRNA:   3'- -CgCUGCUGCGgCUCCa-UCG--------------CUGCUGG- -5'
11473 3' -56.5 NC_003085.1 + 2393 0.67 0.626625
Target:  5'- cGUGGcCGAcauggacacCGCCGAgcuGGUGGUGACGAa- -3'
miRNA:   3'- -CGCU-GCU---------GCGGCU---CCAUCGCUGCUgg -5'
11473 3' -56.5 NC_003085.1 + 38061 0.66 0.690941
Target:  5'- cGCGGCGGugcgucaGCCGGcGGUAGCGcuCcACCc -3'
miRNA:   3'- -CGCUGCUg------CGGCU-CCAUCGCu-GcUGG- -5'
11473 3' -56.5 NC_003085.1 + 9511 0.66 0.687754
Target:  5'- gGCGGCGcGCGgCGGgucaucggcucccuGGUAGUGcACGACg -3'
miRNA:   3'- -CGCUGC-UGCgGCU--------------CCAUCGC-UGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.