miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11479 3' -59.1 NC_003085.1 + 16045 1.1 0.000304
Target:  5'- cUGCCUGCCCAUCACCUCGGACGGUGCc -3'
miRNA:   3'- -ACGGACGGGUAGUGGAGCCUGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 1482 0.82 0.039502
Target:  5'- cGCC-GCCCGUCaccgucgccaGCCUCGGcCGGUGCg -3'
miRNA:   3'- aCGGaCGGGUAG----------UGGAGCCuGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 31647 0.76 0.098229
Target:  5'- gGCCUGCCgCAcaggcggCACCggggCGGGCGGUGg -3'
miRNA:   3'- aCGGACGG-GUa------GUGGa---GCCUGCCACg -5'
11479 3' -59.1 NC_003085.1 + 34494 0.76 0.101011
Target:  5'- cGCCU-CCCAgggCACCaCGGACGcGUGCg -3'
miRNA:   3'- aCGGAcGGGUa--GUGGaGCCUGC-CACG- -5'
11479 3' -59.1 NC_003085.1 + 12320 0.73 0.174585
Target:  5'- cGCCagggUGCCCgccGUCGCCgugcccggCGuGACGGUGCc -3'
miRNA:   3'- aCGG----ACGGG---UAGUGGa-------GC-CUGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 25816 0.72 0.21559
Target:  5'- gGCCUG-CCAUCACCcgcgCGGA-GGUGg -3'
miRNA:   3'- aCGGACgGGUAGUGGa---GCCUgCCACg -5'
11479 3' -59.1 NC_003085.1 + 27886 0.72 0.21559
Target:  5'- gGCCaUGCCCGUCACCUgGuGCaGG-GCg -3'
miRNA:   3'- aCGG-ACGGGUAGUGGAgCcUG-CCaCG- -5'
11479 3' -59.1 NC_003085.1 + 24981 0.71 0.221261
Target:  5'- -uCCUGCCgCAgaaCAUCUCGGacacguccGCGGUGCa -3'
miRNA:   3'- acGGACGG-GUa--GUGGAGCC--------UGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 18173 0.71 0.227058
Target:  5'- cGCCUGCCCG-CGCUUacCGGAUGGcagGUc -3'
miRNA:   3'- aCGGACGGGUaGUGGA--GCCUGCCa--CG- -5'
11479 3' -59.1 NC_003085.1 + 42536 0.71 0.232385
Target:  5'- gGCCU-CCCGcuUCGCCUCGGccagcgcGCGG-GCg -3'
miRNA:   3'- aCGGAcGGGU--AGUGGAGCC-------UGCCaCG- -5'
11479 3' -59.1 NC_003085.1 + 44247 0.71 0.232983
Target:  5'- cUGCCggGCCgCGUCGCgCUCGGAcuCGGccUGCc -3'
miRNA:   3'- -ACGGa-CGG-GUAGUG-GAGCCU--GCC--ACG- -5'
11479 3' -59.1 NC_003085.1 + 29655 0.71 0.232983
Target:  5'- cGCCUGCCCAcagaagUCAUgUCGGGCGu--- -3'
miRNA:   3'- aCGGACGGGU------AGUGgAGCCUGCcacg -5'
11479 3' -59.1 NC_003085.1 + 27406 0.71 0.245224
Target:  5'- gGCCuUGUCCAacaCGCCUUcGAUGGUGCu -3'
miRNA:   3'- aCGG-ACGGGUa--GUGGAGcCUGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 6758 0.7 0.264579
Target:  5'- gGCCUGCCg--CGCCguggCGGACGGcgagaGCc -3'
miRNA:   3'- aCGGACGGguaGUGGa---GCCUGCCa----CG- -5'
11479 3' -59.1 NC_003085.1 + 48519 0.7 0.278159
Target:  5'- gGCCUGUCUggCACC-CGGACGcG-GCc -3'
miRNA:   3'- aCGGACGGGuaGUGGaGCCUGC-CaCG- -5'
11479 3' -59.1 NC_003085.1 + 46459 0.7 0.278159
Target:  5'- aGCacccagaGUCCAUCACCaaGGGCGGUGa -3'
miRNA:   3'- aCGga-----CGGGUAGUGGagCCUGCCACg -5'
11479 3' -59.1 NC_003085.1 + 38104 0.7 0.278159
Target:  5'- cGCCgccaCCAUCGUCUCGGA-GGUGCc -3'
miRNA:   3'- aCGGacg-GGUAGUGGAGCCUgCCACG- -5'
11479 3' -59.1 NC_003085.1 + 2048 0.7 0.285862
Target:  5'- ---gUGCCCGUCACCauggaugccaaggccCGGACGGUGa -3'
miRNA:   3'- acggACGGGUAGUGGa--------------GCCUGCCACg -5'
11479 3' -59.1 NC_003085.1 + 45748 0.7 0.292289
Target:  5'- cUGCCUGCgUCGUCACCaccagcacCGGACGcG-GCg -3'
miRNA:   3'- -ACGGACG-GGUAGUGGa-------GCCUGC-CaCG- -5'
11479 3' -59.1 NC_003085.1 + 24106 0.69 0.306974
Target:  5'- gGCgUGCCCGUCACCgucCGGAa-GcGCg -3'
miRNA:   3'- aCGgACGGGUAGUGGa--GCCUgcCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.