miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11479 3' -59.1 NC_003085.1 + 41363 0.67 0.403071
Target:  5'- gGCCggGCCgCGUCACCcacgucaugacggUGGugGGUGa -3'
miRNA:   3'- aCGGa-CGG-GUAGUGGa------------GCCugCCACg -5'
11479 3' -59.1 NC_003085.1 + 11576 0.69 0.306974
Target:  5'- cGuCCUGCCCG-CGCCUggcUGGaACGGgGCa -3'
miRNA:   3'- aC-GGACGGGUaGUGGA---GCC-UGCCaCG- -5'
11479 3' -59.1 NC_003085.1 + 8178 0.69 0.314525
Target:  5'- gUGCUUGCgCAgCGCUUCGGcgucuCGGUGUc -3'
miRNA:   3'- -ACGGACGgGUaGUGGAGCCu----GCCACG- -5'
11479 3' -59.1 NC_003085.1 + 20758 0.69 0.330046
Target:  5'- gGCugCUGCCCG--GCUUCGGGCuGUGCc -3'
miRNA:   3'- aCG--GACGGGUagUGGAGCCUGcCACG- -5'
11479 3' -59.1 NC_003085.1 + 858 0.69 0.330046
Target:  5'- cGCgCUGCCCGaaggCACUccgCaGACGGUGUg -3'
miRNA:   3'- aCG-GACGGGUa---GUGGa--GcCUGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 21686 0.69 0.337213
Target:  5'- cGCCUccaggacgaggugGCCCGcuUCGCCUCGGACauccaGCg -3'
miRNA:   3'- aCGGA-------------CGGGU--AGUGGAGCCUGcca--CG- -5'
11479 3' -59.1 NC_003085.1 + 5796 0.68 0.37128
Target:  5'- cGCCgugGCCUu---CgUCGGAgCGGUGCg -3'
miRNA:   3'- aCGGa--CGGGuaguGgAGCCU-GCCACG- -5'
11479 3' -59.1 NC_003085.1 + 45959 0.68 0.379938
Target:  5'- aGCUUGUacagCGUCGCCUUGGgGCGGcagaUGCg -3'
miRNA:   3'- aCGGACGg---GUAGUGGAGCC-UGCC----ACG- -5'
11479 3' -59.1 NC_003085.1 + 18932 0.68 0.379938
Target:  5'- cGCCaugaGCgCCAUCGCCUacagggcccCGcGACGGUGg -3'
miRNA:   3'- aCGGa---CG-GGUAGUGGA---------GC-CUGCCACg -5'
11479 3' -59.1 NC_003085.1 + 45748 0.7 0.292289
Target:  5'- cUGCCUGCgUCGUCACCaccagcacCGGACGcG-GCg -3'
miRNA:   3'- -ACGGACG-GGUAGUGGa-------GCCUGC-CaCG- -5'
11479 3' -59.1 NC_003085.1 + 2048 0.7 0.285862
Target:  5'- ---gUGCCCGUCACCauggaugccaaggccCGGACGGUGa -3'
miRNA:   3'- acggACGGGUAGUGGa--------------GCCUGCCACg -5'
11479 3' -59.1 NC_003085.1 + 38104 0.7 0.278159
Target:  5'- cGCCgccaCCAUCGUCUCGGA-GGUGCc -3'
miRNA:   3'- aCGGacg-GGUAGUGGAGCCUgCCACG- -5'
11479 3' -59.1 NC_003085.1 + 34494 0.76 0.101011
Target:  5'- cGCCU-CCCAgggCACCaCGGACGcGUGCg -3'
miRNA:   3'- aCGGAcGGGUa--GUGGaGCCUGC-CACG- -5'
11479 3' -59.1 NC_003085.1 + 25816 0.72 0.21559
Target:  5'- gGCCUG-CCAUCACCcgcgCGGA-GGUGg -3'
miRNA:   3'- aCGGACgGGUAGUGGa---GCCUgCCACg -5'
11479 3' -59.1 NC_003085.1 + 24981 0.71 0.221261
Target:  5'- -uCCUGCCgCAgaaCAUCUCGGacacguccGCGGUGCa -3'
miRNA:   3'- acGGACGG-GUa--GUGGAGCC--------UGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 42536 0.71 0.232385
Target:  5'- gGCCU-CCCGcuUCGCCUCGGccagcgcGCGG-GCg -3'
miRNA:   3'- aCGGAcGGGU--AGUGGAGCC-------UGCCaCG- -5'
11479 3' -59.1 NC_003085.1 + 29655 0.71 0.232983
Target:  5'- cGCCUGCCCAcagaagUCAUgUCGGGCGu--- -3'
miRNA:   3'- aCGGACGGGU------AGUGgAGCCUGCcacg -5'
11479 3' -59.1 NC_003085.1 + 44247 0.71 0.232983
Target:  5'- cUGCCggGCCgCGUCGCgCUCGGAcuCGGccUGCc -3'
miRNA:   3'- -ACGGa-CGG-GUAGUG-GAGCCU--GCC--ACG- -5'
11479 3' -59.1 NC_003085.1 + 6758 0.7 0.264579
Target:  5'- gGCCUGCCg--CGCCguggCGGACGGcgagaGCc -3'
miRNA:   3'- aCGGACGGguaGUGGa---GCCUGCCa----CG- -5'
11479 3' -59.1 NC_003085.1 + 46459 0.7 0.278159
Target:  5'- aGCacccagaGUCCAUCACCaaGGGCGGUGa -3'
miRNA:   3'- aCGga-----CGGGUAGUGGagCCUGCCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.