Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11479 | 3' | -59.1 | NC_003085.1 | + | 25816 | 0.72 | 0.21559 |
Target: 5'- gGCCUG-CCAUCACCcgcgCGGA-GGUGg -3' miRNA: 3'- aCGGACgGGUAGUGGa---GCCUgCCACg -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 24981 | 0.71 | 0.221261 |
Target: 5'- -uCCUGCCgCAgaaCAUCUCGGacacguccGCGGUGCa -3' miRNA: 3'- acGGACGG-GUa--GUGGAGCC--------UGCCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 42536 | 0.71 | 0.232385 |
Target: 5'- gGCCU-CCCGcuUCGCCUCGGccagcgcGCGG-GCg -3' miRNA: 3'- aCGGAcGGGU--AGUGGAGCC-------UGCCaCG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 29655 | 0.71 | 0.232983 |
Target: 5'- cGCCUGCCCAcagaagUCAUgUCGGGCGu--- -3' miRNA: 3'- aCGGACGGGU------AGUGgAGCCUGCcacg -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 44247 | 0.71 | 0.232983 |
Target: 5'- cUGCCggGCCgCGUCGCgCUCGGAcuCGGccUGCc -3' miRNA: 3'- -ACGGa-CGG-GUAGUG-GAGCCU--GCC--ACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 6758 | 0.7 | 0.264579 |
Target: 5'- gGCCUGCCg--CGCCguggCGGACGGcgagaGCc -3' miRNA: 3'- aCGGACGGguaGUGGa---GCCUGCCa----CG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 46459 | 0.7 | 0.278159 |
Target: 5'- aGCacccagaGUCCAUCACCaaGGGCGGUGa -3' miRNA: 3'- aCGga-----CGGGUAGUGGagCCUGCCACg -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 20758 | 0.69 | 0.330046 |
Target: 5'- gGCugCUGCCCG--GCUUCGGGCuGUGCc -3' miRNA: 3'- aCG--GACGGGUagUGGAGCCUGcCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 8178 | 0.69 | 0.314525 |
Target: 5'- gUGCUUGCgCAgCGCUUCGGcgucuCGGUGUc -3' miRNA: 3'- -ACGGACGgGUaGUGGAGCCu----GCCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 11576 | 0.69 | 0.306974 |
Target: 5'- cGuCCUGCCCG-CGCCUggcUGGaACGGgGCa -3' miRNA: 3'- aC-GGACGGGUaGUGGA---GCC-UGCCaCG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 45748 | 0.7 | 0.292289 |
Target: 5'- cUGCCUGCgUCGUCACCaccagcacCGGACGcG-GCg -3' miRNA: 3'- -ACGGACG-GGUAGUGGa-------GCCUGC-CaCG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 2048 | 0.7 | 0.285862 |
Target: 5'- ---gUGCCCGUCACCauggaugccaaggccCGGACGGUGa -3' miRNA: 3'- acggACGGGUAGUGGa--------------GCCUGCCACg -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 38104 | 0.7 | 0.278159 |
Target: 5'- cGCCgccaCCAUCGUCUCGGA-GGUGCc -3' miRNA: 3'- aCGGacg-GGUAGUGGAGCCUgCCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 16900 | 0.67 | 0.41589 |
Target: 5'- cGCCUccgccaacucGCUCAugUCGCUgagcuuguUCGcGACGGUGCg -3' miRNA: 3'- aCGGA----------CGGGU--AGUGG--------AGC-CUGCCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 46200 | 0.66 | 0.463632 |
Target: 5'- gGCUccaUGCCCGcUCAUggCGGGCGaGUGUg -3' miRNA: 3'- aCGG---ACGGGU-AGUGgaGCCUGC-CACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 28411 | 0.66 | 0.473523 |
Target: 5'- gGCUUGCCCA-C-CUUCGGgACGGaagcccagagauUGCg -3' miRNA: 3'- aCGGACGGGUaGuGGAGCC-UGCC------------ACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 20132 | 0.66 | 0.473523 |
Target: 5'- gGCCUGCCCcg-----CGG-CGGUGCc -3' miRNA: 3'- aCGGACGGGuaguggaGCCuGCCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 32539 | 0.66 | 0.473523 |
Target: 5'- gGCCuUGCCCu---CCaCGGGCGGggGCu -3' miRNA: 3'- aCGG-ACGGGuaguGGaGCCUGCCa-CG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 25826 | 0.66 | 0.483519 |
Target: 5'- gGCCUGCUCGcgcugcugaagCACCuUCGaGACuuccgGGUGCa -3' miRNA: 3'- aCGGACGGGUa----------GUGG-AGC-CUG-----CCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 16045 | 1.1 | 0.000304 |
Target: 5'- cUGCCUGCCCAUCACCUCGGACGGUGCc -3' miRNA: 3'- -ACGGACGGGUAGUGGAGCCUGCCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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