miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11479 3' -59.1 NC_003085.1 + 18932 0.68 0.379938
Target:  5'- cGCCaugaGCgCCAUCGCCUacagggcccCGcGACGGUGg -3'
miRNA:   3'- aCGGa---CG-GGUAGUGGA---------GC-CUGCCACg -5'
11479 3' -59.1 NC_003085.1 + 19069 0.69 0.338017
Target:  5'- cGCCUguuucuccaGCCCAggCACCgauggccCGGGCGGgaUGCu -3'
miRNA:   3'- aCGGA---------CGGGUa-GUGGa------GCCUGCC--ACG- -5'
11479 3' -59.1 NC_003085.1 + 20132 0.66 0.473523
Target:  5'- gGCCUGCCCcg-----CGG-CGGUGCc -3'
miRNA:   3'- aCGGACGGGuaguggaGCCuGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 20758 0.69 0.330046
Target:  5'- gGCugCUGCCCG--GCUUCGGGCuGUGCc -3'
miRNA:   3'- aCG--GACGGGUagUGGAGCCUGcCACG- -5'
11479 3' -59.1 NC_003085.1 + 21686 0.69 0.337213
Target:  5'- cGCCUccaggacgaggugGCCCGcuUCGCCUCGGACauccaGCg -3'
miRNA:   3'- aCGGA-------------CGGGU--AGUGGAGCCUGcca--CG- -5'
11479 3' -59.1 NC_003085.1 + 24106 0.69 0.306974
Target:  5'- gGCgUGCCCGUCACCgucCGGAa-GcGCg -3'
miRNA:   3'- aCGgACGGGUAGUGGa--GCCUgcCaCG- -5'
11479 3' -59.1 NC_003085.1 + 24377 0.66 0.493615
Target:  5'- gGCCgGgCCAUCaaugGCCU-GGACGGgGCc -3'
miRNA:   3'- aCGGaCgGGUAG----UGGAgCCUGCCaCG- -5'
11479 3' -59.1 NC_003085.1 + 24981 0.71 0.221261
Target:  5'- -uCCUGCCgCAgaaCAUCUCGGacacguccGCGGUGCa -3'
miRNA:   3'- acGGACGG-GUa--GUGGAGCC--------UGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 25023 0.66 0.463632
Target:  5'- cGCCgcuggGCaCCAUCACCcgcgcgaaGGAccCGGUGUu -3'
miRNA:   3'- aCGGa----CG-GGUAGUGGag------CCU--GCCACG- -5'
11479 3' -59.1 NC_003085.1 + 25162 0.66 0.453851
Target:  5'- gGCCgGCgaCCGUgGCCUgGuGGCGGUGg -3'
miRNA:   3'- aCGGaCG--GGUAgUGGAgC-CUGCCACg -5'
11479 3' -59.1 NC_003085.1 + 25816 0.72 0.21559
Target:  5'- gGCCUG-CCAUCACCcgcgCGGA-GGUGg -3'
miRNA:   3'- aCGGACgGGUAGUGGa---GCCUgCCACg -5'
11479 3' -59.1 NC_003085.1 + 25826 0.66 0.483519
Target:  5'- gGCCUGCUCGcgcugcugaagCACCuUCGaGACuuccgGGUGCa -3'
miRNA:   3'- aCGGACGGGUa----------GUGG-AGC-CUG-----CCACG- -5'
11479 3' -59.1 NC_003085.1 + 26653 0.69 0.314525
Target:  5'- aGUCggGgCCGUCGCCUCcuGGGCGGgaGCg -3'
miRNA:   3'- aCGGa-CgGGUAGUGGAG--CCUGCCa-CG- -5'
11479 3' -59.1 NC_003085.1 + 27406 0.71 0.245224
Target:  5'- gGCCuUGUCCAacaCGCCUUcGAUGGUGCu -3'
miRNA:   3'- aCGG-ACGGGUa--GUGGAGcCUGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 27886 0.72 0.21559
Target:  5'- gGCCaUGCCCGUCACCUgGuGCaGG-GCg -3'
miRNA:   3'- aCGG-ACGGGUAGUGGAgCcUG-CCaCG- -5'
11479 3' -59.1 NC_003085.1 + 27943 0.66 0.473523
Target:  5'- gGaCUUGCCCAUCuaCUCGuccGCGGUGUg -3'
miRNA:   3'- aC-GGACGGGUAGugGAGCc--UGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 28411 0.66 0.473523
Target:  5'- gGCUUGCCCA-C-CUUCGGgACGGaagcccagagauUGCg -3'
miRNA:   3'- aCGGACGGGUaGuGGAGCC-UGCC------------ACG- -5'
11479 3' -59.1 NC_003085.1 + 29655 0.71 0.232983
Target:  5'- cGCCUGCCCAcagaagUCAUgUCGGGCGu--- -3'
miRNA:   3'- aCGGACGGGU------AGUGgAGCCUGCcacg -5'
11479 3' -59.1 NC_003085.1 + 31056 0.67 0.397653
Target:  5'- gGCCaGUCgCuUCGCCUCGG--GGUGCg -3'
miRNA:   3'- aCGGaCGG-GuAGUGGAGCCugCCACG- -5'
11479 3' -59.1 NC_003085.1 + 31647 0.76 0.098229
Target:  5'- gGCCUGCCgCAcaggcggCACCggggCGGGCGGUGg -3'
miRNA:   3'- aCGGACGG-GUa------GUGGa---GCCUGCCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.