miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11482 3' -60.2 NC_003085.1 + 1043 0.68 0.326483
Target:  5'- cCAUGCGGaggaaGCCa--GCGCCGCCGAg -3'
miRNA:   3'- cGUACGCCac---CGGgacUGCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 1166 0.74 0.118976
Target:  5'- cGCuUGCGGUagGGCCUacGACGCUGCCGGg -3'
miRNA:   3'- -CGuACGCCA--CCGGGa-CUGCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 2303 0.71 0.21391
Target:  5'- aGCAcgGCGcUGGCCUgccuCGCCACCGGc -3'
miRNA:   3'- -CGUa-CGCcACCGGGacu-GCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 2896 0.66 0.411803
Target:  5'- cGUAUGuCGGgaaggaccucuacggGGCCCcagucugGAUGCCGCUGGu -3'
miRNA:   3'- -CGUAC-GCCa--------------CCGGGa------CUGCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 3689 0.68 0.311223
Target:  5'- ---cGCGGcGaGUCCUGACGCCGcguCCGGu -3'
miRNA:   3'- cguaCGCCaC-CGGGACUGCGGU---GGCU- -5'
11482 3' -60.2 NC_003085.1 + 4020 0.67 0.384179
Target:  5'- gGCAgaguUGGUGGUgCCgugacGACGCCACCGc -3'
miRNA:   3'- -CGUac--GCCACCG-GGa----CUGCGGUGGCu -5'
11482 3' -60.2 NC_003085.1 + 5244 0.67 0.375534
Target:  5'- -gAUGUGGUGGUUC-GACGCUGCgGGc -3'
miRNA:   3'- cgUACGCCACCGGGaCUGCGGUGgCU- -5'
11482 3' -60.2 NC_003085.1 + 6700 0.73 0.160212
Target:  5'- gGCuUGCGGccGCCCUGcaccgcacccAUGCCGCCGAu -3'
miRNA:   3'- -CGuACGCCacCGGGAC----------UGCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 8153 0.67 0.375535
Target:  5'- gGCGUGuCGGUGGgCgUGAgGUCGUCGAa -3'
miRNA:   3'- -CGUAC-GCCACCgGgACUgCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 8666 0.67 0.375535
Target:  5'- ---cGCGcGUGGCCUUgGGCGCCgggguGCCGu -3'
miRNA:   3'- cguaCGC-CACCGGGA-CUGCGG-----UGGCu -5'
11482 3' -60.2 NC_003085.1 + 9640 0.66 0.438729
Target:  5'- gGCGgagucUGGUGGCCCUgugaagauuggGACGgCCGCCa- -3'
miRNA:   3'- -CGUac---GCCACCGGGA-----------CUGC-GGUGGcu -5'
11482 3' -60.2 NC_003085.1 + 12300 0.73 0.160212
Target:  5'- ---cGCGGUGGUCCgcuggguugcGGCGCaCACCGAc -3'
miRNA:   3'- cguaCGCCACCGGGa---------CUGCG-GUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 12567 0.68 0.334318
Target:  5'- aGCGUGCuGuUGGCCCaGGUGCUGCUGAu -3'
miRNA:   3'- -CGUACGcC-ACCGGGaCUGCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 12663 0.66 0.447289
Target:  5'- aGCGUGCGGgacgaagugUGcGCCUgccuccggguggaUGACGCCACg-- -3'
miRNA:   3'- -CGUACGCC---------AC-CGGG-------------ACUGCGGUGgcu -5'
11482 3' -60.2 NC_003085.1 + 12757 0.71 0.197892
Target:  5'- uGCGUGUcgaGGUGGCCUggggUGAUGCCccuGCCGc -3'
miRNA:   3'- -CGUACG---CCACCGGG----ACUGCGG---UGGCu -5'
11482 3' -60.2 NC_003085.1 + 13811 0.68 0.318784
Target:  5'- uGCGUGgaGGUGGCgCCaugacgugcaGACGCCGCCc- -3'
miRNA:   3'- -CGUACg-CCACCG-GGa---------CUGCGGUGGcu -5'
11482 3' -60.2 NC_003085.1 + 15358 1.1 0.000246
Target:  5'- uGCAUGCGGUGGCCCUGACGCCACCGAa -3'
miRNA:   3'- -CGUACGCCACCGGGACUGCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 15839 0.7 0.248659
Target:  5'- cGCcUGUGGUGGCCCaGACuucgaagGCCGuuGGc -3'
miRNA:   3'- -CGuACGCCACCGGGaCUG-------CGGUggCU- -5'
11482 3' -60.2 NC_003085.1 + 16696 0.66 0.448245
Target:  5'- cGCAggGCGG-GGgCUUGGgGCUugCGAc -3'
miRNA:   3'- -CGUa-CGCCaCCgGGACUgCGGugGCU- -5'
11482 3' -60.2 NC_003085.1 + 18076 0.68 0.334318
Target:  5'- aCGUGCGGcUGGCCUcuuUGCgGCCGGg -3'
miRNA:   3'- cGUACGCC-ACCGGGacuGCGgUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.