miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11482 3' -60.2 NC_003085.1 + 19439 0.66 0.410893
Target:  5'- gGCGUGUGGaUGGacaccaaCCcGugGCaCACCGGc -3'
miRNA:   3'- -CGUACGCC-ACCg------GGaCugCG-GUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 19391 0.67 0.367022
Target:  5'- cGCGUGggcCGGUaccccagcaaGGCCCagggcGGCGCCACCu- -3'
miRNA:   3'- -CGUAC---GCCA----------CCGGGa----CUGCGGUGGcu -5'
11482 3' -60.2 NC_003085.1 + 5244 0.67 0.375534
Target:  5'- -gAUGUGGUGGUUC-GACGCUGCgGGc -3'
miRNA:   3'- cgUACGCCACCGGGaCUGCGGUGgCU- -5'
11482 3' -60.2 NC_003085.1 + 36958 0.67 0.375534
Target:  5'- gGCAgggccGCGG-GGCCauguUGGCGCCGCuuCGAc -3'
miRNA:   3'- -CGUa----CGCCaCCGGg---ACUGCGGUG--GCU- -5'
11482 3' -60.2 NC_003085.1 + 46800 0.67 0.375534
Target:  5'- -gAUGaCGGUGGCCacguccuUGGgcggcaucaccuCGCCGCCGAg -3'
miRNA:   3'- cgUAC-GCCACCGGg------ACU------------GCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 4020 0.67 0.384179
Target:  5'- gGCAgaguUGGUGGUgCCgugacGACGCCACCGc -3'
miRNA:   3'- -CGUac--GCCACCG-GGa----CUGCGGUGGCu -5'
11482 3' -60.2 NC_003085.1 + 42457 0.66 0.401861
Target:  5'- ---aGCGGUccgugucgaGGCCCgUGGCGUCAucuCCGAg -3'
miRNA:   3'- cguaCGCCA---------CCGGG-ACUGCGGU---GGCU- -5'
11482 3' -60.2 NC_003085.1 + 22488 0.66 0.401861
Target:  5'- gGCA--CGGUGGCgaCgGACGgCACCGAc -3'
miRNA:   3'- -CGUacGCCACCGg-GaCUGCgGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 25183 0.66 0.409984
Target:  5'- ---gGCGGUGGCgaUGAgcgccaaCGUCGCCGAg -3'
miRNA:   3'- cguaCGCCACCGggACU-------GCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 29773 0.68 0.341487
Target:  5'- uCGUGCGcacUGGCCCUGGCGgcaugcuucucguCCACCc- -3'
miRNA:   3'- cGUACGCc--ACCGGGACUGC-------------GGUGGcu -5'
11482 3' -60.2 NC_003085.1 + 13811 0.68 0.318784
Target:  5'- uGCGUGgaGGUGGCgCCaugacgugcaGACGCCGCCc- -3'
miRNA:   3'- -CGUACg-CCACCG-GGa---------CUGCGGUGGcu -5'
11482 3' -60.2 NC_003085.1 + 25786 0.68 0.311222
Target:  5'- aCGUGCaGGUGGg---GACGCCGCUGAa -3'
miRNA:   3'- cGUACG-CCACCgggaCUGCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 6700 0.73 0.160212
Target:  5'- gGCuUGCGGccGCCCUGcaccgcacccAUGCCGCCGAu -3'
miRNA:   3'- -CGuACGCCacCGGGAC----------UGCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 34061 0.72 0.187803
Target:  5'- cGC-UGcCGGUuuGGCUCUGuucCGCCGCCGAu -3'
miRNA:   3'- -CGuAC-GCCA--CCGGGACu--GCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 12757 0.71 0.197892
Target:  5'- uGCGUGUcgaGGUGGCCUggggUGAUGCCccuGCCGc -3'
miRNA:   3'- -CGUACG---CCACCGGG----ACUGCGG---UGGCu -5'
11482 3' -60.2 NC_003085.1 + 2303 0.71 0.21391
Target:  5'- aGCAcgGCGcUGGCCUgccuCGCCACCGGc -3'
miRNA:   3'- -CGUa-CGCcACCGGGacu-GCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 41921 0.7 0.248659
Target:  5'- gGCGUGUagcccgugcccacGGcaUGGCCCcacuUGcCGCCACCGAg -3'
miRNA:   3'- -CGUACG-------------CC--ACCGGG----ACuGCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 33685 0.69 0.268721
Target:  5'- cGCAUGcCGGUcagacucccuuGGCCCUGGagUGCCcgucaACCGGa -3'
miRNA:   3'- -CGUAC-GCCA-----------CCGGGACU--GCGG-----UGGCU- -5'
11482 3' -60.2 NC_003085.1 + 25303 0.69 0.275466
Target:  5'- gGCcgGCcaGGUGGacgacgCCgugGugGCCACCGAc -3'
miRNA:   3'- -CGuaCG--CCACCg-----GGa--CugCGGUGGCU- -5'
11482 3' -60.2 NC_003085.1 + 30224 0.69 0.28936
Target:  5'- cCAUGCaaaUGGCCCUGGCGCagGCCu- -3'
miRNA:   3'- cGUACGcc-ACCGGGACUGCGg-UGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.