Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11482 | 3' | -60.2 | NC_003085.1 | + | 24571 | 0.66 | 0.447289 |
Target: 5'- gGCgAUGaGGcGGCCCUGgaacuggGCGCCGCUGc -3' miRNA: 3'- -CG-UACgCCaCCGGGAC-------UGCGGUGGCu -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 3689 | 0.68 | 0.311223 |
Target: 5'- ---cGCGGcGaGUCCUGACGCCGcguCCGGu -3' miRNA: 3'- cguaCGCCaC-CGGGACUGCGGU---GGCU- -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 18076 | 0.68 | 0.334318 |
Target: 5'- aCGUGCGGcUGGCCUcuuUGCgGCCGGg -3' miRNA: 3'- cGUACGCC-ACCGGGacuGCGgUGGCU- -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 19424 | 0.68 | 0.34229 |
Target: 5'- uGCAacuUGUGcUGGCCCUGGaaGCCGCgGAc -3' miRNA: 3'- -CGU---ACGCcACCGGGACUg-CGGUGgCU- -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 8153 | 0.67 | 0.375535 |
Target: 5'- gGCGUGuCGGUGGgCgUGAgGUCGUCGAa -3' miRNA: 3'- -CGUAC-GCCACCgGgACUgCGGUGGCU- -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 8666 | 0.67 | 0.375535 |
Target: 5'- ---cGCGcGUGGCCUUgGGCGCCgggguGCCGu -3' miRNA: 3'- cguaCGC-CACCGGGA-CUGCGG-----UGGCu -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 15358 | 1.1 | 0.000246 |
Target: 5'- uGCAUGCGGUGGCCCUGACGCCACCGAa -3' miRNA: 3'- -CGUACGCCACCGGGACUGCGGUGGCU- -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 48513 | 0.69 | 0.268722 |
Target: 5'- gGCA-GCGGccugucUGGCaCCcgGACGCgGCCGAc -3' miRNA: 3'- -CGUaCGCC------ACCG-GGa-CUGCGgUGGCU- -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 1043 | 0.68 | 0.326483 |
Target: 5'- cCAUGCGGaggaaGCCa--GCGCCGCCGAg -3' miRNA: 3'- cGUACGCCac---CGGgacUGCGGUGGCU- -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 20941 | 0.67 | 0.367022 |
Target: 5'- ---cGCGGauucGCCCUGACGguCCACCGc -3' miRNA: 3'- cguaCGCCac--CGGGACUGC--GGUGGCu -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 20141 | 0.66 | 0.446333 |
Target: 5'- cGCG-GCGGU-GCCCUGuccaauaGCGCUggccaugGCCGAg -3' miRNA: 3'- -CGUaCGCCAcCGGGAC-------UGCGG-------UGGCU- -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 15839 | 0.7 | 0.248659 |
Target: 5'- cGCcUGUGGUGGCCCaGACuucgaagGCCGuuGGc -3' miRNA: 3'- -CGuACGCCACCGGGaCUG-------CGGUggCU- -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 30376 | 0.66 | 0.444426 |
Target: 5'- cGgGUGCGGcgcacuccguccgGGCCC-GGCGCCugCu- -3' miRNA: 3'- -CgUACGCCa------------CCGGGaCUGCGGugGcu -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 12567 | 0.68 | 0.334318 |
Target: 5'- aGCGUGCuGuUGGCCCaGGUGCUGCUGAu -3' miRNA: 3'- -CGUACGcC-ACCGGGaCUGCGGUGGCU- -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 1166 | 0.74 | 0.118976 |
Target: 5'- cGCuUGCGGUagGGCCUacGACGCUGCCGGg -3' miRNA: 3'- -CGuACGCCA--CCGGGa-CUGCGGUGGCU- -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 29263 | 0.66 | 0.401861 |
Target: 5'- cGCGUcGUGGcUGGCCCaGuCGUgCACCGGc -3' miRNA: 3'- -CGUA-CGCC-ACCGGGaCuGCG-GUGGCU- -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 47782 | 0.69 | 0.296511 |
Target: 5'- uGCGUGCaGUGGUagagggUGACGUCGCCGc -3' miRNA: 3'- -CGUACGcCACCGgg----ACUGCGGUGGCu -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 36958 | 0.67 | 0.375534 |
Target: 5'- gGCAgggccGCGG-GGCCauguUGGCGCCGCuuCGAc -3' miRNA: 3'- -CGUa----CGCCaCCGGg---ACUGCGGUG--GCU- -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 5244 | 0.67 | 0.375534 |
Target: 5'- -gAUGUGGUGGUUC-GACGCUGCgGGc -3' miRNA: 3'- cgUACGCCACCGGGaCUGCGGUGgCU- -5' |
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11482 | 3' | -60.2 | NC_003085.1 | + | 19391 | 0.67 | 0.367022 |
Target: 5'- cGCGUGggcCGGUaccccagcaaGGCCCagggcGGCGCCACCu- -3' miRNA: 3'- -CGUAC---GCCA----------CCGGGa----CUGCGGUGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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