Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11482 | 5' | -54.7 | NC_003085.1 | + | 32150 | 0.68 | 0.604186 |
Target: 5'- gGUgGcGCGGUGGGuuACGGcgucGGCCAGGCUg -3' miRNA: 3'- gUAgC-CGCCGCCU--UGUC----UCGGUUUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 26127 | 0.68 | 0.615282 |
Target: 5'- --cCGGCGGCGcuuggccggccaGAGCGGcGUCAAGCa -3' miRNA: 3'- guaGCCGCCGC------------CUUGUCuCGGUUUGg -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 3422 | 0.68 | 0.615282 |
Target: 5'- gUAUC-GCGcGCGGAugcGCAGAGCCcacuGACa -3' miRNA: 3'- -GUAGcCGC-CGCCU---UGUCUCGGu---UUGg -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 4216 | 0.68 | 0.615282 |
Target: 5'- --aCGcGCGGCGGGuuacgcugaGCGucAGCCGGGCCg -3' miRNA: 3'- guaGC-CGCCGCCU---------UGUc-UCGGUUUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 9342 | 0.68 | 0.626392 |
Target: 5'- --gCGGCGGCcaGGAcCAGcAGCCGAGg- -3' miRNA: 3'- guaGCCGCCG--CCUuGUC-UCGGUUUgg -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 41559 | 0.67 | 0.636397 |
Target: 5'- gCcgCGGCGGCagucgcgGGAGcCAGAGUCAGcACg -3' miRNA: 3'- -GuaGCCGCCG-------CCUU-GUCUCGGUU-UGg -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 12018 | 0.67 | 0.637509 |
Target: 5'- --gCGGUGGCGGGcGCGGGGUUGgcgcucgcuAGCCg -3' miRNA: 3'- guaGCCGCCGCCU-UGUCUCGGU---------UUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 130 | 0.67 | 0.637509 |
Target: 5'- uGUgGGgagagGGCGGGACGGAGCUGGgaggucGCCu -3' miRNA: 3'- gUAgCCg----CCGCCUUGUCUCGGUU------UGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 14327 | 0.67 | 0.659715 |
Target: 5'- --aCGGCaccgaaGGCaGGAGaagacgaGGGGCCGGACCu -3' miRNA: 3'- guaGCCG------CCG-CCUUg------UCUCGGUUUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 39803 | 0.67 | 0.659715 |
Target: 5'- aCGUUGGCGGCcGucccaaucuucACAGGGCCAccaGACUc -3' miRNA: 3'- -GUAGCCGCCGcCu----------UGUCUCGGU---UUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 49137 | 0.67 | 0.659715 |
Target: 5'- -cUUGGCGGCGGGcuucuucuucGCGGGGgCAgcgGACg -3' miRNA: 3'- guAGCCGCCGCCU----------UGUCUCgGU---UUGg -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 2643 | 0.67 | 0.670785 |
Target: 5'- -cUCGGCGGCG-AGguGAuGCCGcccaaggacguGGCCa -3' miRNA: 3'- guAGCCGCCGCcUUguCU-CGGU-----------UUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 5540 | 0.67 | 0.670785 |
Target: 5'- --aCGGCGGCGGccauccgguuGGCGGAcauGCUgaaAGACCc -3' miRNA: 3'- guaGCCGCCGCC----------UUGUCU---CGG---UUUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 18558 | 0.67 | 0.670785 |
Target: 5'- ---aGGUGGCGGGcaaGGAcgGCCAAGCg -3' miRNA: 3'- guagCCGCCGCCUug-UCU--CGGUUUGg -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 44022 | 0.67 | 0.681817 |
Target: 5'- -cUCGGCGGUGGAgagACGGgaAGCgGu-CCg -3' miRNA: 3'- guAGCCGCCGCCU---UGUC--UCGgUuuGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 1248 | 0.67 | 0.681817 |
Target: 5'- ---gGGCuGCGGAgGCAGguGGCCGAAUCc -3' miRNA: 3'- guagCCGcCGCCU-UGUC--UCGGUUUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 21112 | 0.67 | 0.681817 |
Target: 5'- --aCGGCGGUGccGCGGAuggcgauaGCCAAAUCc -3' miRNA: 3'- guaGCCGCCGCcuUGUCU--------CGGUUUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 1961 | 0.67 | 0.681817 |
Target: 5'- gUAUCGcaGUGGCGGAcacggaacgcgGCAGcGCCAuaaguacgcgGACCg -3' miRNA: 3'- -GUAGC--CGCCGCCU-----------UGUCuCGGU----------UUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 34954 | 0.67 | 0.681817 |
Target: 5'- --cUGGcCGGCGGAggcgccucACAGgaAGCCGauGACCu -3' miRNA: 3'- guaGCC-GCCGCCU--------UGUC--UCGGU--UUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 35954 | 0.66 | 0.691706 |
Target: 5'- --aUGGCGuCGGGaaccguuucgcguAgGGGGCCAGGCCg -3' miRNA: 3'- guaGCCGCcGCCU-------------UgUCUCGGUUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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