miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11482 5' -54.7 NC_003085.1 + 34101 0.71 0.416075
Target:  5'- -uUCGGUGGCGu--CAGGGCC--ACCg -3'
miRNA:   3'- guAGCCGCCGCcuuGUCUCGGuuUGG- -5'
11482 5' -54.7 NC_003085.1 + 30761 0.71 0.445136
Target:  5'- -cUCGucaGGCGGGGCGG-GCCAcuGACCg -3'
miRNA:   3'- guAGCcg-CCGCCUUGUCuCGGU--UUGG- -5'
11482 5' -54.7 NC_003085.1 + 7600 0.71 0.445136
Target:  5'- aCGUCGGCgcaccgcgaGGUGGAcCAGcGCCGGGCg -3'
miRNA:   3'- -GUAGCCG---------CCGCCUuGUCuCGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 12411 0.7 0.455073
Target:  5'- uCGUCGGCGccagcGCGGuACAG-GCCGGuguCCg -3'
miRNA:   3'- -GUAGCCGC-----CGCCuUGUCuCGGUUu--GG- -5'
11482 5' -54.7 NC_003085.1 + 36691 0.7 0.465129
Target:  5'- --aCGGCGGCaGGGGCAucaccCCAGGCCa -3'
miRNA:   3'- guaGCCGCCG-CCUUGUcuc--GGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 14377 0.7 0.495962
Target:  5'- --cUGGCuGcGCGGAugAGGGgCAGACCc -3'
miRNA:   3'- guaGCCG-C-CGCCUugUCUCgGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 13649 0.7 0.495962
Target:  5'- -cUCGGCgagcaGGUGGAACGGuguucacgguGCCAGACg -3'
miRNA:   3'- guAGCCG-----CCGCCUUGUCu---------CGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 40572 0.7 0.506446
Target:  5'- -cUUGGUGGCGGuGCGcauGCCAGACg -3'
miRNA:   3'- guAGCCGCCGCCuUGUcu-CGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 9227 0.69 0.521278
Target:  5'- --cCGGCGGCGaaGAGCccgccaccaauggcgAGGGCCA-GCCa -3'
miRNA:   3'- guaGCCGCCGC--CUUG---------------UCUCGGUuUGG- -5'
11482 5' -54.7 NC_003085.1 + 43364 0.69 0.549251
Target:  5'- gCGUCGuaGGCGGcaAGCAGggaucugccuuGGCCGAACg -3'
miRNA:   3'- -GUAGCcgCCGCC--UUGUC-----------UCGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 490 0.69 0.549251
Target:  5'- cCAUCaGC-GCGGAgaugaaggcGCGcGGGCCGGACCg -3'
miRNA:   3'- -GUAGcCGcCGCCU---------UGU-CUCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 19809 0.69 0.549251
Target:  5'- --cCGGCGGCGuGGACAucGUC-GACCa -3'
miRNA:   3'- guaGCCGCCGC-CUUGUcuCGGuUUGG- -5'
11482 5' -54.7 NC_003085.1 + 289 0.69 0.549251
Target:  5'- --gCGGCGGCaGGAcCGGgcGGCCuccGACCu -3'
miRNA:   3'- guaGCCGCCG-CCUuGUC--UCGGu--UUGG- -5'
11482 5' -54.7 NC_003085.1 + 28511 0.69 0.560136
Target:  5'- cCAUUcaGGCGGUGGAcgcguCAGGGCgAAuCCg -3'
miRNA:   3'- -GUAG--CCGCCGCCUu----GUCUCGgUUuGG- -5'
11482 5' -54.7 NC_003085.1 + 42380 0.68 0.571081
Target:  5'- -cUCGGCGGCauGAGCGcGGGCCuuguCCu -3'
miRNA:   3'- guAGCCGCCGc-CUUGU-CUCGGuuu-GG- -5'
11482 5' -54.7 NC_003085.1 + 38949 0.68 0.580975
Target:  5'- --cUGGCGGCuGGGucguccucaACGGAGCCAucgucggugagacGGCCc -3'
miRNA:   3'- guaGCCGCCG-CCU---------UGUCUCGGU-------------UUGG- -5'
11482 5' -54.7 NC_003085.1 + 565 0.68 0.582076
Target:  5'- ---aGGCGGCGcGGCuggcGGGCCAAugCu -3'
miRNA:   3'- guagCCGCCGCcUUGu---CUCGGUUugG- -5'
11482 5' -54.7 NC_003085.1 + 4858 0.68 0.582076
Target:  5'- --gCGGCGGggccuuucgUGGGACGGGGCauuuAGCCu -3'
miRNA:   3'- guaGCCGCC---------GCCUUGUCUCGgu--UUGG- -5'
11482 5' -54.7 NC_003085.1 + 40232 0.68 0.582076
Target:  5'- cCAUUGGUGGCGGGcucuucgccGcCGGGGCCuacguCCc -3'
miRNA:   3'- -GUAGCCGCCGCCU---------U-GUCUCGGuuu--GG- -5'
11482 5' -54.7 NC_003085.1 + 5173 0.68 0.582076
Target:  5'- cCAUCcuGGC-GCGGAagGCAGGGCgGcGCCg -3'
miRNA:   3'- -GUAG--CCGcCGCCU--UGUCUCGgUuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.