miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11482 5' -54.7 NC_003085.1 + 15392 1.12 0.000618
Target:  5'- uCAUCGGCGGCGGAACAGAGCCAAACCg -3'
miRNA:   3'- -GUAGCCGCCGCCUUGUCUCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 19063 0.85 0.055874
Target:  5'- --gCGcGCGGCGGAGCAGGcGCCGGGCCc -3'
miRNA:   3'- guaGC-CGCCGCCUUGUCU-CGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 27553 0.78 0.147159
Target:  5'- --cCGGCGGCGGugacgucgccaucuGGCAGGGCaCGGACCc -3'
miRNA:   3'- guaGCCGCCGCC--------------UUGUCUCG-GUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 39896 0.77 0.184994
Target:  5'- -cUCGGCGGCGG--CAG-GCCAAACg -3'
miRNA:   3'- guAGCCGCCGCCuuGUCuCGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 42748 0.77 0.190092
Target:  5'- uCAUCGGCGGCauGGGugcgguGCAGGGCggccgCAAGCCg -3'
miRNA:   3'- -GUAGCCGCCG--CCU------UGUCUCG-----GUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 7519 0.77 0.195314
Target:  5'- -cUCGGUGGCGGcAAgUGGGGCCAuGCCg -3'
miRNA:   3'- guAGCCGCCGCC-UU-GUCUCGGUuUGG- -5'
11482 5' -54.7 NC_003085.1 + 6292 0.76 0.200661
Target:  5'- --gCGGCGGUGGAGCgacuGGAG-CAGGCCg -3'
miRNA:   3'- guaGCCGCCGCCUUG----UCUCgGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 48524 0.76 0.206134
Target:  5'- -cUCGGCGGCGaGGGCGcGGGCCuu-CCa -3'
miRNA:   3'- guAGCCGCCGC-CUUGU-CUCGGuuuGG- -5'
11482 5' -54.7 NC_003085.1 + 26718 0.76 0.222742
Target:  5'- uCGUCGGC-GCGGGuguCGGAGCCGAgugcuucucggcaGCCg -3'
miRNA:   3'- -GUAGCCGcCGCCUu--GUCUCGGUU-------------UGG- -5'
11482 5' -54.7 NC_003085.1 + 24714 0.75 0.261391
Target:  5'- gCAUCGGCGGCuucGCGGGuGCCAAcACCa -3'
miRNA:   3'- -GUAGCCGCCGccuUGUCU-CGGUU-UGG- -5'
11482 5' -54.7 NC_003085.1 + 3955 0.74 0.268225
Target:  5'- uGUC-GCGGCccgGGGAUGGAGCCAGACg -3'
miRNA:   3'- gUAGcCGCCG---CCUUGUCUCGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 24354 0.74 0.268225
Target:  5'- --aCGGCGaCGGGACGGccuuuggcGGCCGGGCCa -3'
miRNA:   3'- guaGCCGCcGCCUUGUC--------UCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 20108 0.74 0.297004
Target:  5'- ---aGGUGGCGGGGCuGGAGUCcGGCCu -3'
miRNA:   3'- guagCCGCCGCCUUG-UCUCGGuUUGG- -5'
11482 5' -54.7 NC_003085.1 + 18115 0.73 0.31227
Target:  5'- uGUCGGCgcgGGCGGGACGGccGGCCugGGACg -3'
miRNA:   3'- gUAGCCG---CCGCCUUGUC--UCGG--UUUGg -5'
11482 5' -54.7 NC_003085.1 + 5478 0.73 0.327317
Target:  5'- aGUUGGaGGCGGAcaacgcgGCguGGGGCCGGGCCg -3'
miRNA:   3'- gUAGCCgCCGCCU-------UG--UCUCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 26240 0.73 0.344565
Target:  5'- --gCGGCGGCcgucuGGAGCAGcccGGCCAcuGCCu -3'
miRNA:   3'- guaGCCGCCG-----CCUUGUC---UCGGUu-UGG- -5'
11482 5' -54.7 NC_003085.1 + 4540 0.72 0.370319
Target:  5'- gCAUCGGCGGCgacaacuacugaGGGACGccauGAGCgAGACg -3'
miRNA:   3'- -GUAGCCGCCG------------CCUUGU----CUCGgUUUGg -5'
11482 5' -54.7 NC_003085.1 + 8340 0.72 0.376515
Target:  5'- uCAUCgGGCGcGUGGAGCGGcuggaagaaaggguGGCCgGAGCCa -3'
miRNA:   3'- -GUAG-CCGC-CGCCUUGUC--------------UCGG-UUUGG- -5'
11482 5' -54.7 NC_003085.1 + 47155 0.71 0.406649
Target:  5'- --cCGGUGGCGaGGCAG-GCCAGcGCCg -3'
miRNA:   3'- guaGCCGCCGCcUUGUCuCGGUU-UGG- -5'
11482 5' -54.7 NC_003085.1 + 34101 0.71 0.416075
Target:  5'- -uUCGGUGGCGu--CAGGGCC--ACCg -3'
miRNA:   3'- guAGCCGCCGCcuuGUCUCGGuuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.