miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11482 5' -54.7 NC_003085.1 + 41559 0.67 0.636397
Target:  5'- gCcgCGGCGGCagucgcgGGAGcCAGAGUCAGcACg -3'
miRNA:   3'- -GuaGCCGCCG-------CCUU-GUCUCGGUU-UGg -5'
11482 5' -54.7 NC_003085.1 + 19809 0.69 0.549251
Target:  5'- --cCGGCGGCGuGGACAucGUC-GACCa -3'
miRNA:   3'- guaGCCGCCGC-CUUGUcuCGGuUUGG- -5'
11482 5' -54.7 NC_003085.1 + 28511 0.69 0.560136
Target:  5'- cCAUUcaGGCGGUGGAcgcguCAGGGCgAAuCCg -3'
miRNA:   3'- -GUAG--CCGCCGCCUu----GUCUCGgUUuGG- -5'
11482 5' -54.7 NC_003085.1 + 42380 0.68 0.571081
Target:  5'- -cUCGGCGGCauGAGCGcGGGCCuuguCCu -3'
miRNA:   3'- guAGCCGCCGc-CUUGU-CUCGGuuu-GG- -5'
11482 5' -54.7 NC_003085.1 + 38949 0.68 0.580975
Target:  5'- --cUGGCGGCuGGGucguccucaACGGAGCCAucgucggugagacGGCCc -3'
miRNA:   3'- guaGCCGCCG-CCU---------UGUCUCGGU-------------UUGG- -5'
11482 5' -54.7 NC_003085.1 + 5173 0.68 0.582076
Target:  5'- cCAUCcuGGC-GCGGAagGCAGGGCgGcGCCg -3'
miRNA:   3'- -GUAG--CCGcCGCCU--UGUCUCGgUuUGG- -5'
11482 5' -54.7 NC_003085.1 + 40232 0.68 0.582076
Target:  5'- cCAUUGGUGGCGGGcucuucgccGcCGGGGCCuacguCCc -3'
miRNA:   3'- -GUAGCCGCCGCCU---------U-GUCUCGGuuu--GG- -5'
11482 5' -54.7 NC_003085.1 + 32150 0.68 0.604186
Target:  5'- gGUgGcGCGGUGGGuuACGGcgucGGCCAGGCUg -3'
miRNA:   3'- gUAgC-CGCCGCCU--UGUC----UCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 4216 0.68 0.615282
Target:  5'- --aCGcGCGGCGGGuuacgcugaGCGucAGCCGGGCCg -3'
miRNA:   3'- guaGC-CGCCGCCU---------UGUc-UCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 43364 0.69 0.549251
Target:  5'- gCGUCGuaGGCGGcaAGCAGggaucugccuuGGCCGAACg -3'
miRNA:   3'- -GUAGCcgCCGCC--UUGUC-----------UCGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 13649 0.7 0.495962
Target:  5'- -cUCGGCgagcaGGUGGAACGGuguucacgguGCCAGACg -3'
miRNA:   3'- guAGCCG-----CCGCCUUGUCu---------CGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 34101 0.71 0.416075
Target:  5'- -uUCGGUGGCGu--CAGGGCC--ACCg -3'
miRNA:   3'- guAGCCGCCGCcuuGUCUCGGuuUGG- -5'
11482 5' -54.7 NC_003085.1 + 27553 0.78 0.147159
Target:  5'- --cCGGCGGCGGugacgucgccaucuGGCAGGGCaCGGACCc -3'
miRNA:   3'- guaGCCGCCGCC--------------UUGUCUCG-GUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 48524 0.76 0.206134
Target:  5'- -cUCGGCGGCGaGGGCGcGGGCCuu-CCa -3'
miRNA:   3'- guAGCCGCCGC-CUUGU-CUCGGuuuGG- -5'
11482 5' -54.7 NC_003085.1 + 24714 0.75 0.261391
Target:  5'- gCAUCGGCGGCuucGCGGGuGCCAAcACCa -3'
miRNA:   3'- -GUAGCCGCCGccuUGUCU-CGGUU-UGG- -5'
11482 5' -54.7 NC_003085.1 + 3955 0.74 0.268225
Target:  5'- uGUC-GCGGCccgGGGAUGGAGCCAGACg -3'
miRNA:   3'- gUAGcCGCCG---CCUUGUCUCGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 24354 0.74 0.268225
Target:  5'- --aCGGCGaCGGGACGGccuuuggcGGCCGGGCCa -3'
miRNA:   3'- guaGCCGCcGCCUUGUC--------UCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 20108 0.74 0.297004
Target:  5'- ---aGGUGGCGGGGCuGGAGUCcGGCCu -3'
miRNA:   3'- guagCCGCCGCCUUG-UCUCGGuUUGG- -5'
11482 5' -54.7 NC_003085.1 + 8340 0.72 0.376515
Target:  5'- uCAUCgGGCGcGUGGAGCGGcuggaagaaaggguGGCCgGAGCCa -3'
miRNA:   3'- -GUAG-CCGC-CGCCUUGUC--------------UCGG-UUUGG- -5'
11482 5' -54.7 NC_003085.1 + 35893 0.71 0.416075
Target:  5'- ---gGGCcGCGGAGuccCAGGGCCAuGCCa -3'
miRNA:   3'- guagCCGcCGCCUU---GUCUCGGUuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.