miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11482 5' -54.7 NC_003085.1 + 43279 0.66 0.736025
Target:  5'- uGUCGGCaccGuCGGcAC-GAGCCAGGCUg -3'
miRNA:   3'- gUAGCCGc--C-GCCuUGuCUCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 49137 0.67 0.659715
Target:  5'- -cUUGGCGGCGGGcuucuucuucGCGGGGgCAgcgGACg -3'
miRNA:   3'- guAGCCGCCGCCU----------UGUCUCgGU---UUGg -5'
11482 5' -54.7 NC_003085.1 + 12018 0.67 0.637509
Target:  5'- --gCGGUGGCGGGcGCGGGGUUGgcgcucgcuAGCCg -3'
miRNA:   3'- guaGCCGCCGCCU-UGUCUCGGU---------UUGG- -5'
11482 5' -54.7 NC_003085.1 + 15392 1.12 0.000618
Target:  5'- uCAUCGGCGGCGGAACAGAGCCAAACCg -3'
miRNA:   3'- -GUAGCCGCCGCCUUGUCUCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 22707 0.66 0.725349
Target:  5'- gGUUGGUGGCGa---AGGGCC--GCCg -3'
miRNA:   3'- gUAGCCGCCGCcuugUCUCGGuuUGG- -5'
11482 5' -54.7 NC_003085.1 + 40315 0.66 0.714579
Target:  5'- --gCGGCGGC-GAGCuccGCCAGguGCCg -3'
miRNA:   3'- guaGCCGCCGcCUUGucuCGGUU--UGG- -5'
11482 5' -54.7 NC_003085.1 + 18344 0.66 0.714579
Target:  5'- -cUCGGCGcGCuGcuCGGGGUUGAGCCg -3'
miRNA:   3'- guAGCCGC-CGcCuuGUCUCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 19342 0.66 0.713497
Target:  5'- --cCGGCGGCGGAugGcguccguguagagGAGgC-GGCCg -3'
miRNA:   3'- guaGCCGCCGCCUugU-------------CUCgGuUUGG- -5'
11482 5' -54.7 NC_003085.1 + 19210 0.66 0.691706
Target:  5'- ---gGGCGGCGGGggcugggcgccgcGCAaGGCCugcGCCa -3'
miRNA:   3'- guagCCGCCGCCU-------------UGUcUCGGuu-UGG- -5'
11482 5' -54.7 NC_003085.1 + 2643 0.67 0.670785
Target:  5'- -cUCGGCGGCG-AGguGAuGCCGcccaaggacguGGCCa -3'
miRNA:   3'- guAGCCGCCGCcUUguCU-CGGU-----------UUGG- -5'
11482 5' -54.7 NC_003085.1 + 1961 0.67 0.681817
Target:  5'- gUAUCGcaGUGGCGGAcacggaacgcgGCAGcGCCAuaaguacgcgGACCg -3'
miRNA:   3'- -GUAGC--CGCCGCCU-----------UGUCuCGGU----------UUGG- -5'
11482 5' -54.7 NC_003085.1 + 8397 0.66 0.692801
Target:  5'- uCAUCGGCagcccccagucGCGuAGCAGcccGCCAAGCCg -3'
miRNA:   3'- -GUAGCCGc----------CGCcUUGUCu--CGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 33875 0.66 0.736025
Target:  5'- --aCGGCGGCGGggUuu-GC--GACCu -3'
miRNA:   3'- guaGCCGCCGCCuuGucuCGguUUGG- -5'
11482 5' -54.7 NC_003085.1 + 1248 0.67 0.681817
Target:  5'- ---gGGCuGCGGAgGCAGguGGCCGAAUCc -3'
miRNA:   3'- guagCCGcCGCCU-UGUC--UCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 7918 0.66 0.736025
Target:  5'- gCcgCcGCGGCGGcAGCAGAcGUCAcuCCa -3'
miRNA:   3'- -GuaGcCGCCGCC-UUGUCU-CGGUuuGG- -5'
11482 5' -54.7 NC_003085.1 + 33033 0.66 0.692801
Target:  5'- aCGUCGGCGcCuGGAuAUGGGGCCAGAg- -3'
miRNA:   3'- -GUAGCCGCcG-CCU-UGUCUCGGUUUgg -5'
11482 5' -54.7 NC_003085.1 + 5540 0.67 0.670785
Target:  5'- --aCGGCGGCGGccauccgguuGGCGGAcauGCUgaaAGACCc -3'
miRNA:   3'- guaGCCGCCGCC----------UUGUCU---CGG---UUUGG- -5'
11482 5' -54.7 NC_003085.1 + 39803 0.67 0.659715
Target:  5'- aCGUUGGCGGCcGucccaaucuucACAGGGCCAccaGACUc -3'
miRNA:   3'- -GUAGCCGCCGcCu----------UGUCUCGGU---UUGG- -5'
11482 5' -54.7 NC_003085.1 + 34192 0.66 0.725349
Target:  5'- ---gGcGCGGCGGGugAGcucGGCCGcGGCCu -3'
miRNA:   3'- guagC-CGCCGCCUugUC---UCGGU-UUGG- -5'
11482 5' -54.7 NC_003085.1 + 10569 0.66 0.714579
Target:  5'- aGUCGGCGGCGccguaguguuGCAGuacCCGAACa -3'
miRNA:   3'- gUAGCCGCCGCcu--------UGUCuc-GGUUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.