Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11482 | 5' | -54.7 | NC_003085.1 | + | 33875 | 0.66 | 0.736025 |
Target: 5'- --aCGGCGGCGGggUuu-GC--GACCu -3' miRNA: 3'- guaGCCGCCGCCuuGucuCGguUUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 34232 | 0.66 | 0.725349 |
Target: 5'- --aCGGCGuaauggccacCGGGGCAGGGCCcucGCCc -3' miRNA: 3'- guaGCCGCc---------GCCUUGUCUCGGuu-UGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 40842 | 0.66 | 0.734962 |
Target: 5'- --aCGGCGGCcGGGCuG-GCCAAccuggagGCCa -3' miRNA: 3'- guaGCCGCCGcCUUGuCuCGGUU-------UGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 43279 | 0.66 | 0.736025 |
Target: 5'- uGUCGGCaccGuCGGcAC-GAGCCAGGCUg -3' miRNA: 3'- gUAGCCGc--C-GCCuUGuCUCGGUUUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 11345 | 0.66 | 0.736025 |
Target: 5'- ---aGGUGGCGGAAgaacuCGGcgucAGCCAGgacACCg -3' miRNA: 3'- guagCCGCCGCCUU-----GUC----UCGGUU---UGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 26909 | 0.66 | 0.736025 |
Target: 5'- cCGUCu-CGGCGG-GCAGcGCCAuGCCu -3' miRNA: 3'- -GUAGccGCCGCCuUGUCuCGGUuUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 37988 | 0.66 | 0.736025 |
Target: 5'- gCGUCuGCGGCGGugGugGGAcGCuCAcACCg -3' miRNA: 3'- -GUAGcCGCCGCC--UugUCU-CG-GUuUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 42108 | 0.66 | 0.736025 |
Target: 5'- uGUCgaGGUGGCGGAggACGGcaAGCgAAugCa -3' miRNA: 3'- gUAG--CCGCCGCCU--UGUC--UCGgUUugG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 40782 | 0.66 | 0.736025 |
Target: 5'- aCGUUGGCGGaCGGcacccCGGcGCCcaAGGCCa -3' miRNA: 3'- -GUAGCCGCC-GCCuu---GUCuCGG--UUUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 1018 | 0.66 | 0.725349 |
Target: 5'- --aCGGUggcuguugGGCGGAauugaaGCAGAaggcGCCGAACUg -3' miRNA: 3'- guaGCCG--------CCGCCU------UGUCU----CGGUUUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 544 | 0.66 | 0.722128 |
Target: 5'- -uUCGGCagccagGGCGGGguggccgucgaaguGCAGGG-CGAGCCc -3' miRNA: 3'- guAGCCG------CCGCCU--------------UGUCUCgGUUUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 22943 | 0.66 | 0.703726 |
Target: 5'- gCGUCGaCGGCGcGGCGaAGCCGGACg -3' miRNA: 3'- -GUAGCcGCCGCcUUGUcUCGGUUUGg -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 34192 | 0.66 | 0.725349 |
Target: 5'- ---gGcGCGGCGGGugAGcucGGCCGcGGCCu -3' miRNA: 3'- guagC-CGCCGCCUugUC---UCGGU-UUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 7918 | 0.66 | 0.736025 |
Target: 5'- gCcgCcGCGGCGGcAGCAGAcGUCAcuCCa -3' miRNA: 3'- -GuaGcCGCCGCC-UUGUCU-CGGUuuGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 35954 | 0.66 | 0.691706 |
Target: 5'- --aUGGCGuCGGGaaccguuucgcguAgGGGGCCAGGCCg -3' miRNA: 3'- guaGCCGCcGCCU-------------UgUCUCGGUUUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 25181 | 0.66 | 0.692801 |
Target: 5'- --gUGGCGGUGGcgAugAGcGCCAAcgucGCCg -3' miRNA: 3'- guaGCCGCCGCC--UugUCuCGGUU----UGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 41389 | 0.66 | 0.692801 |
Target: 5'- --aCGGUGGUGGGugAcGGCCGuguugucggAGCCu -3' miRNA: 3'- guaGCCGCCGCCUugUcUCGGU---------UUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 44341 | 0.66 | 0.692801 |
Target: 5'- --gCGGCGacGCGGGAgAGGGC--GGCCa -3' miRNA: 3'- guaGCCGC--CGCCUUgUCUCGguUUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 28233 | 0.66 | 0.703726 |
Target: 5'- cCAUgGGUGGCGGcAGCGGuacuugggacGGCUccACCu -3' miRNA: 3'- -GUAgCCGCCGCC-UUGUC----------UCGGuuUGG- -5' |
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11482 | 5' | -54.7 | NC_003085.1 | + | 22707 | 0.66 | 0.725349 |
Target: 5'- gGUUGGUGGCGa---AGGGCC--GCCg -3' miRNA: 3'- gUAGCCGCCGCcuugUCUCGGuuUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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