miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11482 5' -54.7 NC_003085.1 + 130 0.67 0.637509
Target:  5'- uGUgGGgagagGGCGGGACGGAGCUGGgaggucGCCu -3'
miRNA:   3'- gUAgCCg----CCGCCUUGUCUCGGUU------UGG- -5'
11482 5' -54.7 NC_003085.1 + 289 0.69 0.549251
Target:  5'- --gCGGCGGCaGGAcCGGgcGGCCuccGACCu -3'
miRNA:   3'- guaGCCGCCG-CCUuGUC--UCGGu--UUGG- -5'
11482 5' -54.7 NC_003085.1 + 490 0.69 0.549251
Target:  5'- cCAUCaGC-GCGGAgaugaaggcGCGcGGGCCGGACCg -3'
miRNA:   3'- -GUAGcCGcCGCCU---------UGU-CUCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 544 0.66 0.722128
Target:  5'- -uUCGGCagccagGGCGGGguggccgucgaaguGCAGGG-CGAGCCc -3'
miRNA:   3'- guAGCCG------CCGCCU--------------UGUCUCgGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 565 0.68 0.582076
Target:  5'- ---aGGCGGCGcGGCuggcGGGCCAAugCu -3'
miRNA:   3'- guagCCGCCGCcUUGu---CUCGGUUugG- -5'
11482 5' -54.7 NC_003085.1 + 1018 0.66 0.725349
Target:  5'- --aCGGUggcuguugGGCGGAauugaaGCAGAaggcGCCGAACUg -3'
miRNA:   3'- guaGCCG--------CCGCCU------UGUCU----CGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 1248 0.67 0.681817
Target:  5'- ---gGGCuGCGGAgGCAGguGGCCGAAUCc -3'
miRNA:   3'- guagCCGcCGCCU-UGUC--UCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 1961 0.67 0.681817
Target:  5'- gUAUCGcaGUGGCGGAcacggaacgcgGCAGcGCCAuaaguacgcgGACCg -3'
miRNA:   3'- -GUAGC--CGCCGCCU-----------UGUCuCGGU----------UUGG- -5'
11482 5' -54.7 NC_003085.1 + 2643 0.67 0.670785
Target:  5'- -cUCGGCGGCG-AGguGAuGCCGcccaaggacguGGCCa -3'
miRNA:   3'- guAGCCGCCGCcUUguCU-CGGU-----------UUGG- -5'
11482 5' -54.7 NC_003085.1 + 3422 0.68 0.615282
Target:  5'- gUAUC-GCGcGCGGAugcGCAGAGCCcacuGACa -3'
miRNA:   3'- -GUAGcCGC-CGCCU---UGUCUCGGu---UUGg -5'
11482 5' -54.7 NC_003085.1 + 3955 0.74 0.268225
Target:  5'- uGUC-GCGGCccgGGGAUGGAGCCAGACg -3'
miRNA:   3'- gUAGcCGCCG---CCUUGUCUCGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 4216 0.68 0.615282
Target:  5'- --aCGcGCGGCGGGuuacgcugaGCGucAGCCGGGCCg -3'
miRNA:   3'- guaGC-CGCCGCCU---------UGUc-UCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 4540 0.72 0.370319
Target:  5'- gCAUCGGCGGCgacaacuacugaGGGACGccauGAGCgAGACg -3'
miRNA:   3'- -GUAGCCGCCG------------CCUUGU----CUCGgUUUGg -5'
11482 5' -54.7 NC_003085.1 + 4858 0.68 0.582076
Target:  5'- --gCGGCGGggccuuucgUGGGACGGGGCauuuAGCCu -3'
miRNA:   3'- guaGCCGCC---------GCCUUGUCUCGgu--UUGG- -5'
11482 5' -54.7 NC_003085.1 + 5173 0.68 0.582076
Target:  5'- cCAUCcuGGC-GCGGAagGCAGGGCgGcGCCg -3'
miRNA:   3'- -GUAG--CCGcCGCCU--UGUCUCGgUuUGG- -5'
11482 5' -54.7 NC_003085.1 + 5478 0.73 0.327317
Target:  5'- aGUUGGaGGCGGAcaacgcgGCguGGGGCCGGGCCg -3'
miRNA:   3'- gUAGCCgCCGCCU-------UG--UCUCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 5540 0.67 0.670785
Target:  5'- --aCGGCGGCGGccauccgguuGGCGGAcauGCUgaaAGACCc -3'
miRNA:   3'- guaGCCGCCGCC----------UUGUCU---CGG---UUUGG- -5'
11482 5' -54.7 NC_003085.1 + 6292 0.76 0.200661
Target:  5'- --gCGGCGGUGGAGCgacuGGAG-CAGGCCg -3'
miRNA:   3'- guaGCCGCCGCCUUG----UCUCgGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 7519 0.77 0.195314
Target:  5'- -cUCGGUGGCGGcAAgUGGGGCCAuGCCg -3'
miRNA:   3'- guAGCCGCCGCC-UU-GUCUCGGUuUGG- -5'
11482 5' -54.7 NC_003085.1 + 7600 0.71 0.445136
Target:  5'- aCGUCGGCgcaccgcgaGGUGGAcCAGcGCCGGGCg -3'
miRNA:   3'- -GUAGCCG---------CCGCCUuGUCuCGGUUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.