miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11482 5' -54.7 NC_003085.1 + 7918 0.66 0.736025
Target:  5'- gCcgCcGCGGCGGcAGCAGAcGUCAcuCCa -3'
miRNA:   3'- -GuaGcCGCCGCC-UUGUCU-CGGUuuGG- -5'
11482 5' -54.7 NC_003085.1 + 8340 0.72 0.376515
Target:  5'- uCAUCgGGCGcGUGGAGCGGcuggaagaaaggguGGCCgGAGCCa -3'
miRNA:   3'- -GUAG-CCGC-CGCCUUGUC--------------UCGG-UUUGG- -5'
11482 5' -54.7 NC_003085.1 + 8397 0.66 0.692801
Target:  5'- uCAUCGGCagcccccagucGCGuAGCAGcccGCCAAGCCg -3'
miRNA:   3'- -GUAGCCGc----------CGCcUUGUCu--CGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 9227 0.69 0.521278
Target:  5'- --cCGGCGGCGaaGAGCccgccaccaauggcgAGGGCCA-GCCa -3'
miRNA:   3'- guaGCCGCCGC--CUUG---------------UCUCGGUuUGG- -5'
11482 5' -54.7 NC_003085.1 + 9342 0.68 0.626392
Target:  5'- --gCGGCGGCcaGGAcCAGcAGCCGAGg- -3'
miRNA:   3'- guaGCCGCCG--CCUuGUC-UCGGUUUgg -5'
11482 5' -54.7 NC_003085.1 + 10569 0.66 0.714579
Target:  5'- aGUCGGCGGCGccguaguguuGCAGuacCCGAACa -3'
miRNA:   3'- gUAGCCGCCGCcu--------UGUCuc-GGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 11345 0.66 0.736025
Target:  5'- ---aGGUGGCGGAAgaacuCGGcgucAGCCAGgacACCg -3'
miRNA:   3'- guagCCGCCGCCUU-----GUC----UCGGUU---UGG- -5'
11482 5' -54.7 NC_003085.1 + 12018 0.67 0.637509
Target:  5'- --gCGGUGGCGGGcGCGGGGUUGgcgcucgcuAGCCg -3'
miRNA:   3'- guaGCCGCCGCCU-UGUCUCGGU---------UUGG- -5'
11482 5' -54.7 NC_003085.1 + 12411 0.7 0.455073
Target:  5'- uCGUCGGCGccagcGCGGuACAG-GCCGGuguCCg -3'
miRNA:   3'- -GUAGCCGC-----CGCCuUGUCuCGGUUu--GG- -5'
11482 5' -54.7 NC_003085.1 + 13649 0.7 0.495962
Target:  5'- -cUCGGCgagcaGGUGGAACGGuguucacgguGCCAGACg -3'
miRNA:   3'- guAGCCG-----CCGCCUUGUCu---------CGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 14327 0.67 0.659715
Target:  5'- --aCGGCaccgaaGGCaGGAGaagacgaGGGGCCGGACCu -3'
miRNA:   3'- guaGCCG------CCG-CCUUg------UCUCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 14377 0.7 0.495962
Target:  5'- --cUGGCuGcGCGGAugAGGGgCAGACCc -3'
miRNA:   3'- guaGCCG-C-CGCCUugUCUCgGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 15392 1.12 0.000618
Target:  5'- uCAUCGGCGGCGGAACAGAGCCAAACCg -3'
miRNA:   3'- -GUAGCCGCCGCCUUGUCUCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 18115 0.73 0.31227
Target:  5'- uGUCGGCgcgGGCGGGACGGccGGCCugGGACg -3'
miRNA:   3'- gUAGCCG---CCGCCUUGUC--UCGG--UUUGg -5'
11482 5' -54.7 NC_003085.1 + 18344 0.66 0.714579
Target:  5'- -cUCGGCGcGCuGcuCGGGGUUGAGCCg -3'
miRNA:   3'- guAGCCGC-CGcCuuGUCUCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 18558 0.67 0.670785
Target:  5'- ---aGGUGGCGGGcaaGGAcgGCCAAGCg -3'
miRNA:   3'- guagCCGCCGCCUug-UCU--CGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 19063 0.85 0.055874
Target:  5'- --gCGcGCGGCGGAGCAGGcGCCGGGCCc -3'
miRNA:   3'- guaGC-CGCCGCCUUGUCU-CGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 19210 0.66 0.691706
Target:  5'- ---gGGCGGCGGGggcugggcgccgcGCAaGGCCugcGCCa -3'
miRNA:   3'- guagCCGCCGCCU-------------UGUcUCGGuu-UGG- -5'
11482 5' -54.7 NC_003085.1 + 19342 0.66 0.713497
Target:  5'- --cCGGCGGCGGAugGcguccguguagagGAGgC-GGCCg -3'
miRNA:   3'- guaGCCGCCGCCUugU-------------CUCgGuUUGG- -5'
11482 5' -54.7 NC_003085.1 + 19809 0.69 0.549251
Target:  5'- --cCGGCGGCGuGGACAucGUC-GACCa -3'
miRNA:   3'- guaGCCGCCGC-CUUGUcuCGGuUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.