miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11482 5' -54.7 NC_003085.1 + 49137 0.67 0.659715
Target:  5'- -cUUGGCGGCGGGcuucuucuucGCGGGGgCAgcgGACg -3'
miRNA:   3'- guAGCCGCCGCCU----------UGUCUCgGU---UUGg -5'
11482 5' -54.7 NC_003085.1 + 48524 0.76 0.206134
Target:  5'- -cUCGGCGGCGaGGGCGcGGGCCuu-CCa -3'
miRNA:   3'- guAGCCGCCGC-CUUGU-CUCGGuuuGG- -5'
11482 5' -54.7 NC_003085.1 + 47155 0.71 0.406649
Target:  5'- --cCGGUGGCGaGGCAG-GCCAGcGCCg -3'
miRNA:   3'- guaGCCGCCGCcUUGUCuCGGUU-UGG- -5'
11482 5' -54.7 NC_003085.1 + 44341 0.66 0.692801
Target:  5'- --gCGGCGacGCGGGAgAGGGC--GGCCa -3'
miRNA:   3'- guaGCCGC--CGCCUUgUCUCGguUUGG- -5'
11482 5' -54.7 NC_003085.1 + 44022 0.67 0.681817
Target:  5'- -cUCGGCGGUGGAgagACGGgaAGCgGu-CCg -3'
miRNA:   3'- guAGCCGCCGCCU---UGUC--UCGgUuuGG- -5'
11482 5' -54.7 NC_003085.1 + 43364 0.69 0.549251
Target:  5'- gCGUCGuaGGCGGcaAGCAGggaucugccuuGGCCGAACg -3'
miRNA:   3'- -GUAGCcgCCGCC--UUGUC-----------UCGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 43279 0.66 0.736025
Target:  5'- uGUCGGCaccGuCGGcAC-GAGCCAGGCUg -3'
miRNA:   3'- gUAGCCGc--C-GCCuUGuCUCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 42748 0.77 0.190092
Target:  5'- uCAUCGGCGGCauGGGugcgguGCAGGGCggccgCAAGCCg -3'
miRNA:   3'- -GUAGCCGCCG--CCU------UGUCUCG-----GUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 42380 0.68 0.571081
Target:  5'- -cUCGGCGGCauGAGCGcGGGCCuuguCCu -3'
miRNA:   3'- guAGCCGCCGc-CUUGU-CUCGGuuu-GG- -5'
11482 5' -54.7 NC_003085.1 + 42108 0.66 0.736025
Target:  5'- uGUCgaGGUGGCGGAggACGGcaAGCgAAugCa -3'
miRNA:   3'- gUAG--CCGCCGCCU--UGUC--UCGgUUugG- -5'
11482 5' -54.7 NC_003085.1 + 41559 0.67 0.636397
Target:  5'- gCcgCGGCGGCagucgcgGGAGcCAGAGUCAGcACg -3'
miRNA:   3'- -GuaGCCGCCG-------CCUU-GUCUCGGUU-UGg -5'
11482 5' -54.7 NC_003085.1 + 41389 0.66 0.692801
Target:  5'- --aCGGUGGUGGGugAcGGCCGuguugucggAGCCu -3'
miRNA:   3'- guaGCCGCCGCCUugUcUCGGU---------UUGG- -5'
11482 5' -54.7 NC_003085.1 + 40842 0.66 0.734962
Target:  5'- --aCGGCGGCcGGGCuG-GCCAAccuggagGCCa -3'
miRNA:   3'- guaGCCGCCGcCUUGuCuCGGUU-------UGG- -5'
11482 5' -54.7 NC_003085.1 + 40782 0.66 0.736025
Target:  5'- aCGUUGGCGGaCGGcacccCGGcGCCcaAGGCCa -3'
miRNA:   3'- -GUAGCCGCC-GCCuu---GUCuCGG--UUUGG- -5'
11482 5' -54.7 NC_003085.1 + 40572 0.7 0.506446
Target:  5'- -cUUGGUGGCGGuGCGcauGCCAGACg -3'
miRNA:   3'- guAGCCGCCGCCuUGUcu-CGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 40315 0.66 0.714579
Target:  5'- --gCGGCGGC-GAGCuccGCCAGguGCCg -3'
miRNA:   3'- guaGCCGCCGcCUUGucuCGGUU--UGG- -5'
11482 5' -54.7 NC_003085.1 + 40232 0.68 0.582076
Target:  5'- cCAUUGGUGGCGGGcucuucgccGcCGGGGCCuacguCCc -3'
miRNA:   3'- -GUAGCCGCCGCCU---------U-GUCUCGGuuu--GG- -5'
11482 5' -54.7 NC_003085.1 + 39896 0.77 0.184994
Target:  5'- -cUCGGCGGCGG--CAG-GCCAAACg -3'
miRNA:   3'- guAGCCGCCGCCuuGUCuCGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 39803 0.67 0.659715
Target:  5'- aCGUUGGCGGCcGucccaaucuucACAGGGCCAccaGACUc -3'
miRNA:   3'- -GUAGCCGCCGcCu----------UGUCUCGGU---UUGG- -5'
11482 5' -54.7 NC_003085.1 + 38949 0.68 0.580975
Target:  5'- --cUGGCGGCuGGGucguccucaACGGAGCCAucgucggugagacGGCCc -3'
miRNA:   3'- guaGCCGCCG-CCU---------UGUCUCGGU-------------UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.