miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11482 5' -54.7 NC_003085.1 + 20108 0.74 0.297004
Target:  5'- ---aGGUGGCGGGGCuGGAGUCcGGCCu -3'
miRNA:   3'- guagCCGCCGCCUUG-UCUCGGuUUGG- -5'
11482 5' -54.7 NC_003085.1 + 21112 0.67 0.681817
Target:  5'- --aCGGCGGUGccGCGGAuggcgauaGCCAAAUCc -3'
miRNA:   3'- guaGCCGCCGCcuUGUCU--------CGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 22707 0.66 0.725349
Target:  5'- gGUUGGUGGCGa---AGGGCC--GCCg -3'
miRNA:   3'- gUAGCCGCCGCcuugUCUCGGuuUGG- -5'
11482 5' -54.7 NC_003085.1 + 22943 0.66 0.703726
Target:  5'- gCGUCGaCGGCGcGGCGaAGCCGGACg -3'
miRNA:   3'- -GUAGCcGCCGCcUUGUcUCGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 24354 0.74 0.268225
Target:  5'- --aCGGCGaCGGGACGGccuuuggcGGCCGGGCCa -3'
miRNA:   3'- guaGCCGCcGCCUUGUC--------UCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 24714 0.75 0.261391
Target:  5'- gCAUCGGCGGCuucGCGGGuGCCAAcACCa -3'
miRNA:   3'- -GUAGCCGCCGccuUGUCU-CGGUU-UGG- -5'
11482 5' -54.7 NC_003085.1 + 25181 0.66 0.692801
Target:  5'- --gUGGCGGUGGcgAugAGcGCCAAcgucGCCg -3'
miRNA:   3'- guaGCCGCCGCC--UugUCuCGGUU----UGG- -5'
11482 5' -54.7 NC_003085.1 + 26127 0.68 0.615282
Target:  5'- --cCGGCGGCGcuuggccggccaGAGCGGcGUCAAGCa -3'
miRNA:   3'- guaGCCGCCGC------------CUUGUCuCGGUUUGg -5'
11482 5' -54.7 NC_003085.1 + 26240 0.73 0.344565
Target:  5'- --gCGGCGGCcgucuGGAGCAGcccGGCCAcuGCCu -3'
miRNA:   3'- guaGCCGCCG-----CCUUGUC---UCGGUu-UGG- -5'
11482 5' -54.7 NC_003085.1 + 26718 0.76 0.222742
Target:  5'- uCGUCGGC-GCGGGuguCGGAGCCGAgugcuucucggcaGCCg -3'
miRNA:   3'- -GUAGCCGcCGCCUu--GUCUCGGUU-------------UGG- -5'
11482 5' -54.7 NC_003085.1 + 26909 0.66 0.736025
Target:  5'- cCGUCu-CGGCGG-GCAGcGCCAuGCCu -3'
miRNA:   3'- -GUAGccGCCGCCuUGUCuCGGUuUGG- -5'
11482 5' -54.7 NC_003085.1 + 27553 0.78 0.147159
Target:  5'- --cCGGCGGCGGugacgucgccaucuGGCAGGGCaCGGACCc -3'
miRNA:   3'- guaGCCGCCGCC--------------UUGUCUCG-GUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 28233 0.66 0.703726
Target:  5'- cCAUgGGUGGCGGcAGCGGuacuugggacGGCUccACCu -3'
miRNA:   3'- -GUAgCCGCCGCC-UUGUC----------UCGGuuUGG- -5'
11482 5' -54.7 NC_003085.1 + 28511 0.69 0.560136
Target:  5'- cCAUUcaGGCGGUGGAcgcguCAGGGCgAAuCCg -3'
miRNA:   3'- -GUAG--CCGCCGCCUu----GUCUCGgUUuGG- -5'
11482 5' -54.7 NC_003085.1 + 30761 0.71 0.445136
Target:  5'- -cUCGucaGGCGGGGCGG-GCCAcuGACCg -3'
miRNA:   3'- guAGCcg-CCGCCUUGUCuCGGU--UUGG- -5'
11482 5' -54.7 NC_003085.1 + 32150 0.68 0.604186
Target:  5'- gGUgGcGCGGUGGGuuACGGcgucGGCCAGGCUg -3'
miRNA:   3'- gUAgC-CGCCGCCU--UGUC----UCGGUUUGG- -5'
11482 5' -54.7 NC_003085.1 + 33033 0.66 0.692801
Target:  5'- aCGUCGGCGcCuGGAuAUGGGGCCAGAg- -3'
miRNA:   3'- -GUAGCCGCcG-CCU-UGUCUCGGUUUgg -5'
11482 5' -54.7 NC_003085.1 + 33875 0.66 0.736025
Target:  5'- --aCGGCGGCGGggUuu-GC--GACCu -3'
miRNA:   3'- guaGCCGCCGCCuuGucuCGguUUGG- -5'
11482 5' -54.7 NC_003085.1 + 34101 0.71 0.416075
Target:  5'- -uUCGGUGGCGu--CAGGGCC--ACCg -3'
miRNA:   3'- guAGCCGCCGCcuuGUCUCGGuuUGG- -5'
11482 5' -54.7 NC_003085.1 + 34192 0.66 0.725349
Target:  5'- ---gGcGCGGCGGGugAGcucGGCCGcGGCCu -3'
miRNA:   3'- guagC-CGCCGCCUugUC---UCGGU-UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.