miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11483 5' -56.1 NC_003085.1 + 15046 1.1 0.000482
Target:  5'- gUUUUGGCUGGCCGGAAUCCCCAUGCCg -3'
miRNA:   3'- -AAAACCGACCGGCCUUAGGGGUACGG- -5'
11483 5' -56.1 NC_003085.1 + 3061 0.82 0.054409
Target:  5'- gUUUGGCccgccGCCGGAAUCCCC-UGCCa -3'
miRNA:   3'- aAAACCGac---CGGCCUUAGGGGuACGG- -5'
11483 5' -56.1 NC_003085.1 + 1803 0.78 0.112956
Target:  5'- -gUUGGCUGGCCGGGAcuggugcgCCCCcUGUUg -3'
miRNA:   3'- aaAACCGACCGGCCUUa-------GGGGuACGG- -5'
11483 5' -56.1 NC_003085.1 + 7712 0.73 0.2199
Target:  5'- ---aGGCUGGCCGGGcGUCCgagcaggaaaacuCgGUGCCg -3'
miRNA:   3'- aaaaCCGACCGGCCU-UAGG-------------GgUACGG- -5'
11483 5' -56.1 NC_003085.1 + 15142 0.71 0.317271
Target:  5'- --cUGGCUGaaGCUGGAcgCCUCgGUGCCc -3'
miRNA:   3'- aaaACCGAC--CGGCCUuaGGGG-UACGG- -5'
11483 5' -56.1 NC_003085.1 + 38822 0.71 0.317271
Target:  5'- cUUUGGCUGccucuGCCGGcg-CCCCAcacaGCCg -3'
miRNA:   3'- aAAACCGAC-----CGGCCuuaGGGGUa---CGG- -5'
11483 5' -56.1 NC_003085.1 + 48568 0.71 0.317271
Target:  5'- ---gGGUUGGCaCGGGAUgCCCCucggacGCCa -3'
miRNA:   3'- aaaaCCGACCG-GCCUUA-GGGGua----CGG- -5'
11483 5' -56.1 NC_003085.1 + 16235 0.71 0.333454
Target:  5'- ---cGGCUGGCguCGucAUCCUCGUGCUg -3'
miRNA:   3'- aaaaCCGACCG--GCcuUAGGGGUACGG- -5'
11483 5' -56.1 NC_003085.1 + 21880 0.7 0.350233
Target:  5'- --gUGGCcgaacUGGCCGGGuccGUgCCC-UGCCa -3'
miRNA:   3'- aaaACCG-----ACCGGCCU---UAgGGGuACGG- -5'
11483 5' -56.1 NC_003085.1 + 23213 0.7 0.358846
Target:  5'- ---aGGCagUGGCCGGGcugCUCCAgacgGCCg -3'
miRNA:   3'- aaaaCCG--ACCGGCCUua-GGGGUa---CGG- -5'
11483 5' -56.1 NC_003085.1 + 20110 0.7 0.385559
Target:  5'- --gUGGCggGGCUGGAGUCCg---GCCu -3'
miRNA:   3'- aaaACCGa-CCGGCCUUAGGgguaCGG- -5'
11483 5' -56.1 NC_003085.1 + 19513 0.68 0.442768
Target:  5'- ---gGGCU-GCUGGAGggCCUGUGCCa -3'
miRNA:   3'- aaaaCCGAcCGGCCUUagGGGUACGG- -5'
11483 5' -56.1 NC_003085.1 + 25666 0.68 0.452762
Target:  5'- ---cGGaCUgcgacuaccGGCCGGAcgaauUCgCCCAUGCCg -3'
miRNA:   3'- aaaaCC-GA---------CCGGCCUu----AG-GGGUACGG- -5'
11483 5' -56.1 NC_003085.1 + 41358 0.68 0.462877
Target:  5'- ---cGGCaGGCCGGGccgcGUCaCCCAcGUCa -3'
miRNA:   3'- aaaaCCGaCCGGCCU----UAG-GGGUaCGG- -5'
11483 5' -56.1 NC_003085.1 + 26284 0.68 0.462877
Target:  5'- --cUGGCccucGGCCuGAaucAUCCCCAUGUa -3'
miRNA:   3'- aaaACCGa---CCGGcCU---UAGGGGUACGg -5'
11483 5' -56.1 NC_003085.1 + 6376 0.68 0.493908
Target:  5'- --cUGGC-GGCCGGucguuucUUCCUcgGCCg -3'
miRNA:   3'- aaaACCGaCCGGCCuu-----AGGGGuaCGG- -5'
11483 5' -56.1 NC_003085.1 + 19370 0.67 0.519401
Target:  5'- ---aGGC-GGCCGGcguccuucugagccaGcaaGUCCuCCAUGCCg -3'
miRNA:   3'- aaaaCCGaCCGGCC---------------U---UAGG-GGUACGG- -5'
11483 5' -56.1 NC_003085.1 + 7291 0.67 0.525857
Target:  5'- ---aGGCUGGCUgcgacgGGAGagUCCAUGUCc -3'
miRNA:   3'- aaaaCCGACCGG------CCUUagGGGUACGG- -5'
11483 5' -56.1 NC_003085.1 + 38949 0.67 0.536681
Target:  5'- --cUGGC-GGCUGGGucGUCCUCAacggaGCCa -3'
miRNA:   3'- aaaACCGaCCGGCCU--UAGGGGUa----CGG- -5'
11483 5' -56.1 NC_003085.1 + 573 0.67 0.536681
Target:  5'- ---cGGCUGGCgGGccaaugCUCCGUGUg -3'
miRNA:   3'- aaaaCCGACCGgCCuua---GGGGUACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.