Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11483 | 5' | -56.1 | NC_003085.1 | + | 573 | 0.67 | 0.536681 |
Target: 5'- ---cGGCUGGCgGGccaaugCUCCGUGUg -3' miRNA: 3'- aaaaCCGACCGgCCuua---GGGGUACGg -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 795 | 0.66 | 0.580667 |
Target: 5'- --gUGGCcccaGGCCacgguGGAcGUCCgCGUGCCg -3' miRNA: 3'- aaaACCGa---CCGG-----CCU-UAGGgGUACGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 1803 | 0.78 | 0.112956 |
Target: 5'- -gUUGGCUGGCCGGGAcuggugcgCCCCcUGUUg -3' miRNA: 3'- aaAACCGACCGGCCUUa-------GGGGuACGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 3061 | 0.82 | 0.054409 |
Target: 5'- gUUUGGCccgccGCCGGAAUCCCC-UGCCa -3' miRNA: 3'- aAAACCGac---CGGCCUUAGGGGuACGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 6376 | 0.68 | 0.493908 |
Target: 5'- --cUGGC-GGCCGGucguuucUUCCUcgGCCg -3' miRNA: 3'- aaaACCGaCCGGCCuu-----AGGGGuaCGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 7291 | 0.67 | 0.525857 |
Target: 5'- ---aGGCUGGCUgcgacgGGAGagUCCAUGUCc -3' miRNA: 3'- aaaaCCGACCGG------CCUUagGGGUACGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 7712 | 0.73 | 0.2199 |
Target: 5'- ---aGGCUGGCCGGGcGUCCgagcaggaaaacuCgGUGCCg -3' miRNA: 3'- aaaaCCGACCGGCCU-UAGG-------------GgUACGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 15046 | 1.1 | 0.000482 |
Target: 5'- gUUUUGGCUGGCCGGAAUCCCCAUGCCg -3' miRNA: 3'- -AAAACCGACCGGCCUUAGGGGUACGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 15142 | 0.71 | 0.317271 |
Target: 5'- --cUGGCUGaaGCUGGAcgCCUCgGUGCCc -3' miRNA: 3'- aaaACCGAC--CGGCCUuaGGGG-UACGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 15188 | 0.66 | 0.591796 |
Target: 5'- ---cGGCUGaGCCGGug-CgCCAgcGCCg -3' miRNA: 3'- aaaaCCGAC-CGGCCuuaGgGGUa-CGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 16235 | 0.71 | 0.333454 |
Target: 5'- ---cGGCUGGCguCGucAUCCUCGUGCUg -3' miRNA: 3'- aaaaCCGACCG--GCcuUAGGGGUACGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 19370 | 0.67 | 0.519401 |
Target: 5'- ---aGGC-GGCCGGcguccuucugagccaGcaaGUCCuCCAUGCCg -3' miRNA: 3'- aaaaCCGaCCGGCC---------------U---UAGG-GGUACGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 19513 | 0.68 | 0.442768 |
Target: 5'- ---gGGCU-GCUGGAGggCCUGUGCCa -3' miRNA: 3'- aaaaCCGAcCGGCCUUagGGGUACGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 20110 | 0.7 | 0.385559 |
Target: 5'- --gUGGCggGGCUGGAGUCCg---GCCu -3' miRNA: 3'- aaaACCGa-CCGGCCUUAGGgguaCGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 20621 | 0.67 | 0.558552 |
Target: 5'- ---gGGC-GGCgCGGGugcuugcuUCCCCAUGgCCu -3' miRNA: 3'- aaaaCCGaCCG-GCCUu-------AGGGGUAC-GG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 21880 | 0.7 | 0.350233 |
Target: 5'- --gUGGCcgaacUGGCCGGGuccGUgCCC-UGCCa -3' miRNA: 3'- aaaACCG-----ACCGGCCU---UAgGGGuACGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 23213 | 0.7 | 0.358846 |
Target: 5'- ---aGGCagUGGCCGGGcugCUCCAgacgGCCg -3' miRNA: 3'- aaaaCCG--ACCGGCCUua-GGGGUa---CGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 24370 | 0.67 | 0.547582 |
Target: 5'- cUUUGGC-GGCCGGGccaucaauggCCuggacggggCCGUGCCg -3' miRNA: 3'- aAAACCGaCCGGCCUua--------GG---------GGUACGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 25666 | 0.68 | 0.452762 |
Target: 5'- ---cGGaCUgcgacuaccGGCCGGAcgaauUCgCCCAUGCCg -3' miRNA: 3'- aaaaCC-GA---------CCGGCCUu----AG-GGGUACGG- -5' |
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11483 | 5' | -56.1 | NC_003085.1 | + | 26284 | 0.68 | 0.462877 |
Target: 5'- --cUGGCccucGGCCuGAaucAUCCCCAUGUa -3' miRNA: 3'- aaaACCGa---CCGGcCU---UAGGGGUACGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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