Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11483 | 5' | -56.1 | NC_003085.1 | + | 26611 | 0.66 | 0.614149 |
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Target: 5'- ---gGGCgcuGCCGGAcUCUCCuucgcUGCCg -3' miRNA: 3'- aaaaCCGac-CGGCCUuAGGGGu----ACGG- -5' |
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| 11483 | 5' | -56.1 | NC_003085.1 | + | 38717 | 0.66 | 0.590681 |
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Target: 5'- ---cGGCgcccgugUGGCCGGAcagcaacagcGUCCgCuUGCCg -3' miRNA: 3'- aaaaCCG-------ACCGGCCU----------UAGGgGuACGG- -5' |
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| 11483 | 5' | -56.1 | NC_003085.1 | + | 38822 | 0.71 | 0.317271 |
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Target: 5'- cUUUGGCUGccucuGCCGGcg-CCCCAcacaGCCg -3' miRNA: 3'- aAAACCGAC-----CGGCCuuaGGGGUa---CGG- -5' |
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| 11483 | 5' | -56.1 | NC_003085.1 | + | 38949 | 0.67 | 0.536681 |
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Target: 5'- --cUGGC-GGCUGGGucGUCCUCAacggaGCCa -3' miRNA: 3'- aaaACCGaCCGGCCU--UAGGGGUa----CGG- -5' |
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| 11483 | 5' | -56.1 | NC_003085.1 | + | 40996 | 0.66 | 0.580667 |
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Target: 5'- ---gGGCUGGCCcagcGGcGUCgUCAUcGCCg -3' miRNA: 3'- aaaaCCGACCGG----CCuUAGgGGUA-CGG- -5' |
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| 11483 | 5' | -56.1 | NC_003085.1 | + | 41149 | 0.67 | 0.547582 |
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Target: 5'- ----uGCUGGCCGGAugcCUCCAacgGCUa -3' miRNA: 3'- aaaacCGACCGGCCUua-GGGGUa--CGG- -5' |
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| 11483 | 5' | -56.1 | NC_003085.1 | + | 41358 | 0.68 | 0.462877 |
|
Target: 5'- ---cGGCaGGCCGGGccgcGUCaCCCAcGUCa -3' miRNA: 3'- aaaaCCGaCCGGCCU----UAG-GGGUaCGG- -5' |
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| 11483 | 5' | -56.1 | NC_003085.1 | + | 43782 | 0.66 | 0.580667 |
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Target: 5'- ---gGGUcagcaucccgaaUGGCCGGAAUCUCUccGCg -3' miRNA: 3'- aaaaCCG------------ACCGGCCUUAGGGGuaCGg -5' |
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| 11483 | 5' | -56.1 | NC_003085.1 | + | 48568 | 0.71 | 0.317271 |
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Target: 5'- ---gGGUUGGCaCGGGAUgCCCCucggacGCCa -3' miRNA: 3'- aaaaCCGACCG-GCCUUA-GGGGua----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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