miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11486 3' -54.2 NC_003085.1 + 38069 0.67 0.647774
Target:  5'- uGGUGCGUCGCGgagaCGGCAgcGcAGGUg -3'
miRNA:   3'- uCUACGUAGCGCg---GCUGUaaCcUCCG- -5'
11486 3' -54.2 NC_003085.1 + 32026 0.68 0.636567
Target:  5'- -cGUGCGUaccgGCGCgGugA-UGGGGGCg -3'
miRNA:   3'- ucUACGUAg---CGCGgCugUaACCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 23002 0.68 0.625354
Target:  5'- gAGGUGCG-CGCGCCG-CAguccuGGCg -3'
miRNA:   3'- -UCUACGUaGCGCGGCuGUaaccuCCG- -5'
11486 3' -54.2 NC_003085.1 + 5074 0.68 0.61079
Target:  5'- ---gGCAUCGUggucgcgucaagaaGUCGGaGUUGGAGGCg -3'
miRNA:   3'- ucuaCGUAGCG--------------CGGCUgUAACCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 13567 0.68 0.591796
Target:  5'- cGAgcaagGCG-CGCGUgGACGUgggcaccGGAGGCg -3'
miRNA:   3'- uCUa----CGUaGCGCGgCUGUAa------CCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 3697 0.68 0.591796
Target:  5'- gGGAUGCGgccaCGCaGCgCGACGUgccacGcGAGGCg -3'
miRNA:   3'- -UCUACGUa---GCG-CG-GCUGUAa----C-CUCCG- -5'
11486 3' -54.2 NC_003085.1 + 7728 0.69 0.568478
Target:  5'- cGA-GCAggaaaacUCgGUGCCGAaGUUGGAGGCc -3'
miRNA:   3'- uCUaCGU-------AG-CGCGGCUgUAACCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 43427 0.69 0.558552
Target:  5'- cAGA-GCGUCGCGUCGuCGUgaGGGGuGCc -3'
miRNA:   3'- -UCUaCGUAGCGCGGCuGUAa-CCUC-CG- -5'
11486 3' -54.2 NC_003085.1 + 24623 0.69 0.535595
Target:  5'- cAGGUGCugcaGCGCuucaccuCGGCGgaGGAGGCg -3'
miRNA:   3'- -UCUACGuag-CGCG-------GCUGUaaCCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 33179 0.7 0.512977
Target:  5'- --cUGCuccaguaGUCGCGCCaguagcgGGCGUccUGGAGGCg -3'
miRNA:   3'- ucuACG-------UAGCGCGG-------CUGUA--ACCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 9490 0.7 0.483456
Target:  5'- cGGAUaCGUCGCGgUGACGaUGGcGGCg -3'
miRNA:   3'- -UCUAcGUAGCGCgGCUGUaACCuCCG- -5'
11486 3' -54.2 NC_003085.1 + 32847 0.71 0.442768
Target:  5'- gAGAgGCcgCGCGCCG-CGggaccgcccgGGAGGCc -3'
miRNA:   3'- -UCUaCGuaGCGCGGCuGUaa--------CCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 11650 0.71 0.413555
Target:  5'- cGGAggGCAUUGCGCCGggugGCcgaGGAGGUg -3'
miRNA:   3'- -UCUa-CGUAGCGCGGC----UGuaaCCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 3650 0.71 0.413555
Target:  5'- gGGAcgcUGCAcUgGUGgCGAgGUUGGAGGCa -3'
miRNA:   3'- -UCU---ACGU-AgCGCgGCUgUAACCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 40707 0.72 0.380112
Target:  5'- cGGGUGCuggaCGCGCCGguggaccucucgccgGCGccGGAGGCa -3'
miRNA:   3'- -UCUACGua--GCGCGGC---------------UGUaaCCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 361 0.73 0.317271
Target:  5'- gGGAUGa---GCGCCGACAacgGGAGGg -3'
miRNA:   3'- -UCUACguagCGCGGCUGUaa-CCUCCg -5'
11486 3' -54.2 NC_003085.1 + 31447 0.74 0.301686
Target:  5'- cGGAUgGCAcguacggccUCGCGCCGuCGgacaGGAGGCa -3'
miRNA:   3'- -UCUA-CGU---------AGCGCGGCuGUaa--CCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 7464 0.75 0.258496
Target:  5'- cGGuggGCGUCGCGCCucACGcUGGAGGUg -3'
miRNA:   3'- -UCua-CGUAGCGCGGc-UGUaACCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 49297 0.86 0.049775
Target:  5'- --cUGCGUCGCGUCGGCGUcccgGGAGGCg -3'
miRNA:   3'- ucuACGUAGCGCGGCUGUAa---CCUCCG- -5'
11486 3' -54.2 NC_003085.1 + 14023 1.13 0.000578
Target:  5'- gAGAUGCAUCGCGCCGACAUUGGAGGCg -3'
miRNA:   3'- -UCUACGUAGCGCGGCUGUAACCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.