miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11486 5' -56.3 NC_003085.1 + 14057 1.08 0.000822
Target:  5'- aUGACGUCCAACGUCGGCUGCGCAGAGc -3'
miRNA:   3'- -ACUGCAGGUUGCAGCCGACGCGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 19316 0.77 0.147673
Target:  5'- gUGACGUCCuGCGUgGGCUGCuggggccggcgGCGGAu -3'
miRNA:   3'- -ACUGCAGGuUGCAgCCGACG-----------CGUCUc -5'
11486 5' -56.3 NC_003085.1 + 28936 0.73 0.27949
Target:  5'- -cGCGUCUAGCGUCa--UGCGCGGAGu -3'
miRNA:   3'- acUGCAGGUUGCAGccgACGCGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 14361 0.72 0.293918
Target:  5'- gGACagaagCCAGCGgcuGGCUGCGCGGAu -3'
miRNA:   3'- aCUGca---GGUUGCag-CCGACGCGUCUc -5'
11486 5' -56.3 NC_003085.1 + 1535 0.71 0.3245
Target:  5'- gUGAC-UCCAGCGUCuGCUGuCGC-GAGg -3'
miRNA:   3'- -ACUGcAGGUUGCAGcCGAC-GCGuCUC- -5'
11486 5' -56.3 NC_003085.1 + 43354 0.7 0.383546
Target:  5'- gGAgGUCCAG-GUCGGCaugcagGCGaCGGAGg -3'
miRNA:   3'- aCUgCAGGUUgCAGCCGa-----CGC-GUCUC- -5'
11486 5' -56.3 NC_003085.1 + 26966 0.7 0.392543
Target:  5'- -cGCGUCCGAgcUCGGcCUGCGCAGc- -3'
miRNA:   3'- acUGCAGGUUgcAGCC-GACGCGUCuc -5'
11486 5' -56.3 NC_003085.1 + 45103 0.69 0.449302
Target:  5'- cGugGUCCAG-GUCGcGCgcgGCGUAGGc -3'
miRNA:   3'- aCugCAGGUUgCAGC-CGa--CGCGUCUc -5'
11486 5' -56.3 NC_003085.1 + 32129 0.69 0.469207
Target:  5'- gGugGUgCGACGggggCGGCUggugGCGCGGuGg -3'
miRNA:   3'- aCugCAgGUUGCa---GCCGA----CGCGUCuC- -5'
11486 5' -56.3 NC_003085.1 + 2513 0.68 0.49988
Target:  5'- gGACGgugugCCcGCGUCGGCcccUGCGCGc-- -3'
miRNA:   3'- aCUGCa----GGuUGCAGCCG---ACGCGUcuc -5'
11486 5' -56.3 NC_003085.1 + 7496 0.68 0.49988
Target:  5'- gGGCGUCC-GCGUCGaGCgGuUGCAGGa -3'
miRNA:   3'- aCUGCAGGuUGCAGC-CGaC-GCGUCUc -5'
11486 5' -56.3 NC_003085.1 + 9974 0.68 0.504037
Target:  5'- cGGCuUCCGagcgccucgacgcgcACGUCGGCaggGgGCGGAGg -3'
miRNA:   3'- aCUGcAGGU---------------UGCAGCCGa--CgCGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 11996 0.68 0.528222
Target:  5'- cGGCGU-CAGCGUguucgugaaugcggUGGCggGCGCGGGGu -3'
miRNA:   3'- aCUGCAgGUUGCA--------------GCCGa-CGCGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 33204 0.67 0.542081
Target:  5'- gGGCGUCCugGAgG-CGGCgGCGCAGc- -3'
miRNA:   3'- aCUGCAGG--UUgCaGCCGaCGCGUCuc -5'
11486 5' -56.3 NC_003085.1 + 39915 0.67 0.551746
Target:  5'- aGAag-CCAGCGUCGGCcGCGUcgugcacuaccagGGAGc -3'
miRNA:   3'- aCUgcaGGUUGCAGCCGaCGCG-------------UCUC- -5'
11486 5' -56.3 NC_003085.1 + 34274 0.67 0.560381
Target:  5'- cGGCG-CUGGCGcacCGGCUcagccgggccgucaGCGCAGAGg -3'
miRNA:   3'- aCUGCaGGUUGCa--GCCGA--------------CGCGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 11603 0.67 0.563629
Target:  5'- cGACGUCUGGC--CGGCcaGCGCAGGc -3'
miRNA:   3'- aCUGCAGGUUGcaGCCGa-CGCGUCUc -5'
11486 5' -56.3 NC_003085.1 + 43038 0.67 0.581029
Target:  5'- gGGCcguGUCgAGCGgcccgcuggggaaCGGCUGCGUGGAGa -3'
miRNA:   3'- aCUG---CAGgUUGCa------------GCCGACGCGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 47158 0.67 0.585397
Target:  5'- gUGGCGaggcaggCCAGCGcCGuGCUGC-CGGAGc -3'
miRNA:   3'- -ACUGCa------GGUUGCaGC-CGACGcGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 46848 0.66 0.595248
Target:  5'- cGACG-CCAGCGUCugGGCcuugGCcucggagGCAGGGg -3'
miRNA:   3'- aCUGCaGGUUGCAG--CCGa---CG-------CGUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.