Results 1 - 20 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 1535 | 0.71 | 0.3245 |
Target: 5'- gUGAC-UCCAGCGUCuGCUGuCGC-GAGg -3' miRNA: 3'- -ACUGcAGGUUGCAGcCGAC-GCGuCUC- -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 40700 | 0.66 | 0.646952 |
Target: 5'- cGACGUCCGggugcuggacGCGcCGGUggaccucucgccgGCGcCGGAGg -3' miRNA: 3'- aCUGCAGGU----------UGCaGCCGa------------CGC-GUCUC- -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 46925 | 0.66 | 0.640346 |
Target: 5'- aGGCGgcaCAGguUCGGCgcGCGCAGGGg -3' miRNA: 3'- aCUGCag-GUUgcAGCCGa-CGCGUCUC- -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 48022 | 0.66 | 0.629333 |
Target: 5'- aUGGCGUCUucaccuucagGGCGcgcUUGGCUGUGguGAc -3' miRNA: 3'- -ACUGCAGG----------UUGC---AGCCGACGCguCUc -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 9669 | 0.66 | 0.62713 |
Target: 5'- gGACGgccgCCAACGUcgagcacCGGCUGgcgucccUGCAGAc -3' miRNA: 3'- aCUGCa---GGUUGCA-------GCCGAC-------GCGUCUc -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 22902 | 0.66 | 0.607322 |
Target: 5'- cGAC-UCCGGCGgaGGCUGC-CGGGGc -3' miRNA: 3'- aCUGcAGGUUGCagCCGACGcGUCUC- -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 46848 | 0.66 | 0.595248 |
Target: 5'- cGACG-CCAGCGUCugGGCcuugGCcucggagGCAGGGg -3' miRNA: 3'- aCUGCaGGUUGCAG--CCGa---CG-------CGUCUC- -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 43038 | 0.67 | 0.581029 |
Target: 5'- gGGCcguGUCgAGCGgcccgcuggggaaCGGCUGCGUGGAGa -3' miRNA: 3'- aCUG---CAGgUUGCa------------GCCGACGCGUCUC- -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 39915 | 0.67 | 0.551746 |
Target: 5'- aGAag-CCAGCGUCGGCcGCGUcgugcacuaccagGGAGc -3' miRNA: 3'- aCUgcaGGUUGCAGCCGaCGCG-------------UCUC- -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 7496 | 0.68 | 0.49988 |
Target: 5'- gGGCGUCC-GCGUCGaGCgGuUGCAGGa -3' miRNA: 3'- aCUGCAGGuUGCAGC-CGaC-GCGUCUc -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 32129 | 0.69 | 0.469207 |
Target: 5'- gGugGUgCGACGggggCGGCUggugGCGCGGuGg -3' miRNA: 3'- aCugCAgGUUGCa---GCCGA----CGCGUCuC- -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 45103 | 0.69 | 0.449302 |
Target: 5'- cGugGUCCAG-GUCGcGCgcgGCGUAGGc -3' miRNA: 3'- aCugCAGGUUgCAGC-CGa--CGCGUCUc -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 26966 | 0.7 | 0.392543 |
Target: 5'- -cGCGUCCGAgcUCGGcCUGCGCAGc- -3' miRNA: 3'- acUGCAGGUUgcAGCC-GACGCGUCuc -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 47158 | 0.67 | 0.585397 |
Target: 5'- gUGGCGaggcaggCCAGCGcCGuGCUGC-CGGAGc -3' miRNA: 3'- -ACUGCa------GGUUGCaGC-CGACGcGUCUC- -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 22480 | 0.66 | 0.596345 |
Target: 5'- -cGCGguagcCCAGC--CGGCUGCGCAGGc -3' miRNA: 3'- acUGCa----GGUUGcaGCCGACGCGUCUc -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 47368 | 0.66 | 0.596345 |
Target: 5'- aUGGCG-CCGagguGCGgCGGCUGCGCu--- -3' miRNA: 3'- -ACUGCaGGU----UGCaGCCGACGCGucuc -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 39370 | 0.66 | 0.607322 |
Target: 5'- cGGCGguUCCGACGcCGGCggggGCucauGCGGAa -3' miRNA: 3'- aCUGC--AGGUUGCaGCCGa---CG----CGUCUc -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 46117 | 0.66 | 0.607322 |
Target: 5'- gGGCGUCgGggaGCGUCGuCUGUGCGGcGa -3' miRNA: 3'- aCUGCAGgU---UGCAGCcGACGCGUCuC- -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 27909 | 0.66 | 0.650253 |
Target: 5'- gGGCGUCCAcgagcucGCGcCGGUagucaCGCAGGGc -3' miRNA: 3'- aCUGCAGGU-------UGCaGCCGac---GCGUCUC- -5' |
|||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 14057 | 1.08 | 0.000822 |
Target: 5'- aUGACGUCCAACGUCGGCUGCGCAGAGc -3' miRNA: 3'- -ACUGCAGGUUGCAGCCGACGCGUCUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home