Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11486 | 5' | -56.3 | NC_003085.1 | + | 34274 | 0.67 | 0.560381 |
Target: 5'- cGGCG-CUGGCGcacCGGCUcagccgggccgucaGCGCAGAGg -3' miRNA: 3'- aCUGCaGGUUGCa--GCCGA--------------CGCGUCUC- -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 47158 | 0.67 | 0.585397 |
Target: 5'- gUGGCGaggcaggCCAGCGcCGuGCUGC-CGGAGc -3' miRNA: 3'- -ACUGCa------GGUUGCaGC-CGACGcGUCUC- -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 22480 | 0.66 | 0.596345 |
Target: 5'- -cGCGguagcCCAGC--CGGCUGCGCAGGc -3' miRNA: 3'- acUGCa----GGUUGcaGCCGACGCGUCUc -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 47368 | 0.66 | 0.596345 |
Target: 5'- aUGGCG-CCGagguGCGgCGGCUGCGCu--- -3' miRNA: 3'- -ACUGCaGGU----UGCaGCCGACGCGucuc -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 39370 | 0.66 | 0.607322 |
Target: 5'- cGGCGguUCCGACGcCGGCggggGCucauGCGGAa -3' miRNA: 3'- aCUGC--AGGUUGCaGCCGa---CG----CGUCUc -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 46117 | 0.66 | 0.607322 |
Target: 5'- gGGCGUCgGggaGCGUCGuCUGUGCGGcGa -3' miRNA: 3'- aCUGCAGgU---UGCAGCcGACGCGUCuC- -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 27909 | 0.66 | 0.650253 |
Target: 5'- gGGCGUCCAcgagcucGCGcCGGUagucaCGCAGGGc -3' miRNA: 3'- aCUGCAGGU-------UGCaGCCGac---GCGUCUC- -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 42318 | 0.66 | 0.651352 |
Target: 5'- cGAUG-CgGAuuCGUCGGCUGCGguGu- -3' miRNA: 3'- aCUGCaGgUU--GCAGCCGACGCguCuc -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 28936 | 0.73 | 0.27949 |
Target: 5'- -cGCGUCUAGCGUCa--UGCGCGGAGu -3' miRNA: 3'- acUGCAGGUUGCAGccgACGCGUCUC- -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 14361 | 0.72 | 0.293918 |
Target: 5'- gGACagaagCCAGCGgcuGGCUGCGCGGAu -3' miRNA: 3'- aCUGca---GGUUGCag-CCGACGCGUCUc -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 2513 | 0.68 | 0.49988 |
Target: 5'- gGACGgugugCCcGCGUCGGCcccUGCGCGc-- -3' miRNA: 3'- aCUGCa----GGuUGCAGCCG---ACGCGUcuc -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 33204 | 0.67 | 0.542081 |
Target: 5'- gGGCGUCCugGAgG-CGGCgGCGCAGc- -3' miRNA: 3'- aCUGCAGG--UUgCaGCCGaCGCGUCuc -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 19316 | 0.77 | 0.147673 |
Target: 5'- gUGACGUCCuGCGUgGGCUGCuggggccggcgGCGGAu -3' miRNA: 3'- -ACUGCAGGuUGCAgCCGACG-----------CGUCUc -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 11996 | 0.68 | 0.528222 |
Target: 5'- cGGCGU-CAGCGUguucgugaaugcggUGGCggGCGCGGGGu -3' miRNA: 3'- aCUGCAgGUUGCA--------------GCCGa-CGCGUCUC- -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 43354 | 0.7 | 0.383546 |
Target: 5'- gGAgGUCCAG-GUCGGCaugcagGCGaCGGAGg -3' miRNA: 3'- aCUgCAGGUUgCAGCCGa-----CGC-GUCUC- -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 14057 | 1.08 | 0.000822 |
Target: 5'- aUGACGUCCAACGUCGGCUGCGCAGAGc -3' miRNA: 3'- -ACUGCAGGUUGCAGCCGACGCGUCUC- -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 9974 | 0.68 | 0.504037 |
Target: 5'- cGGCuUCCGagcgccucgacgcgcACGUCGGCaggGgGCGGAGg -3' miRNA: 3'- aCUGcAGGU---------------UGCAGCCGa--CgCGUCUC- -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 11603 | 0.67 | 0.563629 |
Target: 5'- cGACGUCUGGC--CGGCcaGCGCAGGc -3' miRNA: 3'- aCUGCAGGUUGcaGCCGa-CGCGUCUc -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 43038 | 0.67 | 0.581029 |
Target: 5'- gGGCcguGUCgAGCGgcccgcuggggaaCGGCUGCGUGGAGa -3' miRNA: 3'- aCUG---CAGgUUGCa------------GCCGACGCGUCUC- -5' |
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11486 | 5' | -56.3 | NC_003085.1 | + | 40700 | 0.66 | 0.646952 |
Target: 5'- cGACGUCCGggugcuggacGCGcCGGUggaccucucgccgGCGcCGGAGg -3' miRNA: 3'- aCUGCAGGU----------UGCaGCCGa------------CGC-GUCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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