Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 11533 | 0.69 | 0.488331 |
Target: 5'- cGGCcGCGcguucgucgagcGCCGGGGCcaUGCG-CCAACg -3' miRNA: 3'- uCUGuCGU------------UGGCCCUG--ACGCaGGUUG- -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 33872 | 0.69 | 0.457652 |
Target: 5'- aGGACGGCGGCgGGGuuUGCGaCCu-- -3' miRNA: 3'- -UCUGUCGUUGgCCCugACGCaGGuug -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 14037 | 0.69 | 0.437782 |
Target: 5'- cGACauuggaGGCGAgCGGGAUgaCGUCCAACg -3' miRNA: 3'- uCUG------UCGUUgGCCCUGacGCAGGUUG- -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 47147 | 0.7 | 0.40893 |
Target: 5'- -aGCGGCGGCCGGuGGCgagGCaggCCAGCg -3' miRNA: 3'- ucUGUCGUUGGCC-CUGa--CGca-GGUUG- -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 290 | 0.71 | 0.372363 |
Target: 5'- cGGCGGCAggACCGGG-CgGCcUCCGACc -3' miRNA: 3'- uCUGUCGU--UGGCCCuGaCGcAGGUUG- -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 49043 | 0.73 | 0.26269 |
Target: 5'- uAGAC-GCGGCCGaGACUgGCGUCCAGg -3' miRNA: 3'- -UCUGuCGUUGGCcCUGA-CGCAGGUUg -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 28718 | 0.74 | 0.224372 |
Target: 5'- cGGGCAGCAGCCGGucCUggaggGCGuacUCCAGCg -3' miRNA: 3'- -UCUGUCGUUGGCCcuGA-----CGC---AGGUUG- -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 15626 | 0.68 | 0.498773 |
Target: 5'- uGGGcCGGUGGCCGGGcggAgaGCGUCCAcaACa -3' miRNA: 3'- -UCU-GUCGUUGGCCC---UgaCGCAGGU--UG- -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 29478 | 0.68 | 0.509312 |
Target: 5'- cGGCGGCAgggccguacuugGCCaGGaACUGC-UCCAGCa -3' miRNA: 3'- uCUGUCGU------------UGGcCC-UGACGcAGGUUG- -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 31658 | 0.68 | 0.509312 |
Target: 5'- cAGGCGGC-ACCGGGGCggGCGgUgGAUg -3' miRNA: 3'- -UCUGUCGuUGGCCCUGa-CGCaGgUUG- -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 35229 | 0.68 | 0.530661 |
Target: 5'- gGGGCuGUAACCGGGcccCUGCuUCCGcuuGCg -3' miRNA: 3'- -UCUGuCGUUGGCCCu--GACGcAGGU---UG- -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 19327 | 0.66 | 0.616391 |
Target: 5'- cGugGGCuGCUGGGGCcggcggcggaugGCGUCCGu- -3' miRNA: 3'- uCugUCGuUGGCCCUGa-----------CGCAGGUug -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 27482 | 0.66 | 0.618619 |
Target: 5'- aAGGgAGCGcuGCCGGGcacCUGCugagCCAACg -3' miRNA: 3'- -UCUgUCGU--UGGCCCu--GACGca--GGUUG- -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 22036 | 0.66 | 0.640911 |
Target: 5'- aGGGCuGCGcuguACCGGcGAUUGCGcCCGcggGCa -3' miRNA: 3'- -UCUGuCGU----UGGCC-CUGACGCaGGU---UG- -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 48512 | 0.66 | 0.660949 |
Target: 5'- cGGCAGCGGCCugucuggcacccGGAC-GCGgCCGACg -3' miRNA: 3'- uCUGUCGUUGGc-----------CCUGaCGCaGGUUG- -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 3733 | 0.66 | 0.663171 |
Target: 5'- cAGGCAGCAcCCGcgcaGGACUuggugagcgGCGUCUAcGCa -3' miRNA: 3'- -UCUGUCGUuGGC----CCUGA---------CGCAGGU-UG- -5' |
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11489 | 5' | -55.6 | NC_003085.1 | + | 12965 | 0.96 | 0.006876 |
Target: 5'- cAGACAGCAA-CGGGACUGCGUCCAACc -3' miRNA: 3'- -UCUGUCGUUgGCCCUGACGCAGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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