miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11489 5' -55.6 NC_003085.1 + 30341 0.66 0.663171
Target:  5'- cGGAC-GCuguCgCGGGGCgcacugcgGCGUCUAGCa -3'
miRNA:   3'- -UCUGuCGuu-G-GCCCUGa-------CGCAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 30473 0.67 0.563263
Target:  5'- uAGGCGGCGACCuGGAC-GCGacgCCugGACu -3'
miRNA:   3'- -UCUGUCGUUGGcCCUGaCGCa--GG--UUG- -5'
11489 5' -55.6 NC_003085.1 + 21027 0.67 0.574254
Target:  5'- cGGACGGCAGCCGcaaucucuGGGCUucCGUCCc-- -3'
miRNA:   3'- -UCUGUCGUUGGC--------CCUGAc-GCAGGuug -5'
11489 5' -55.6 NC_003085.1 + 28021 0.67 0.585294
Target:  5'- cGACGGCua-CGuGGACgGCGUCCu-- -3'
miRNA:   3'- uCUGUCGuugGC-CCUGaCGCAGGuug -5'
11489 5' -55.6 NC_003085.1 + 9459 0.67 0.596374
Target:  5'- uGGACgAGCucgaGGCCGGGcaAUU-CGUCCAGCg -3'
miRNA:   3'- -UCUG-UCG----UUGGCCC--UGAcGCAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 34511 0.67 0.596374
Target:  5'- cGGAC-GCGugCGGcGACaGCGUCagCAACa -3'
miRNA:   3'- -UCUGuCGUugGCC-CUGaCGCAG--GUUG- -5'
11489 5' -55.6 NC_003085.1 + 48130 0.66 0.640911
Target:  5'- cGcCAGCAGuCUGGG-CUGCcuccUCCAGCg -3'
miRNA:   3'- uCuGUCGUU-GGCCCuGACGc---AGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 963 0.66 0.647597
Target:  5'- cAGGCcGCuGCCGGGGCaggacacgccgccGUGUCCAAg -3'
miRNA:   3'- -UCUGuCGuUGGCCCUGa------------CGCAGGUUg -5'
11489 5' -55.6 NC_003085.1 + 351 0.66 0.663171
Target:  5'- aGGGCGGCAa--GGGAUgaGCG-CCGACa -3'
miRNA:   3'- -UCUGUCGUuggCCCUGa-CGCaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 11606 0.68 0.519944
Target:  5'- aGGGCGGCGcgaaggggcuguGCaGGGGCUGCuaCCAGCg -3'
miRNA:   3'- -UCUGUCGU------------UGgCCCUGACGcaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 10727 0.68 0.519944
Target:  5'- uGACGGCAAgCGGacGCUGUugcuGUCCGGCc -3'
miRNA:   3'- uCUGUCGUUgGCCc-UGACG----CAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 11533 0.69 0.488331
Target:  5'- cGGCcGCGcguucgucgagcGCCGGGGCcaUGCG-CCAACg -3'
miRNA:   3'- uCUGuCGU------------UGGCCCUG--ACGCaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 40840 0.74 0.224372
Target:  5'- uGACGGCGGCCGGG-CUG-G-CCAACc -3'
miRNA:   3'- uCUGUCGUUGGCCCuGACgCaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 36861 0.73 0.26269
Target:  5'- uGGCGGCAACCcGGug-GUGUCCGGCa -3'
miRNA:   3'- uCUGUCGUUGGcCCugaCGCAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 44338 0.71 0.338086
Target:  5'- uGGGCGGCGACgCGGGAgaggGCGgCCAAUc -3'
miRNA:   3'- -UCUGUCGUUG-GCCCUga--CGCaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 20105 0.71 0.363576
Target:  5'- -cGCAGguGgCGGGGCUGgaGUCCGGCc -3'
miRNA:   3'- ucUGUCguUgGCCCUGACg-CAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 26759 0.71 0.381294
Target:  5'- cGGCGGCccuucgccaccAACCGgaugcuGGACUGCG-CCAACg -3'
miRNA:   3'- uCUGUCG-----------UUGGC------CCUGACGCaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 24705 0.7 0.390367
Target:  5'- uGGACGGCGGCauCGGcGGCUucGCGggugCCAACa -3'
miRNA:   3'- -UCUGUCGUUG--GCC-CUGA--CGCa---GGUUG- -5'
11489 5' -55.6 NC_003085.1 + 10829 0.7 0.418416
Target:  5'- cGGGCAGCGACugCGGGAgugggaUGCGagcUCCGGCc -3'
miRNA:   3'- -UCUGUCGUUG--GCCCUg-----ACGC---AGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 17887 0.69 0.477994
Target:  5'- uGACAuggccuGCAACCcaguGGACUGCGUCguaGACg -3'
miRNA:   3'- uCUGU------CGUUGGc---CCUGACGCAGg--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.