miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11489 5' -55.6 NC_003085.1 + 290 0.71 0.372363
Target:  5'- cGGCGGCAggACCGGG-CgGCcUCCGACc -3'
miRNA:   3'- uCUGUCGU--UGGCCCuGaCGcAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 351 0.66 0.663171
Target:  5'- aGGGCGGCAa--GGGAUgaGCG-CCGACa -3'
miRNA:   3'- -UCUGUCGUuggCCCUGa-CGCaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 963 0.66 0.647597
Target:  5'- cAGGCcGCuGCCGGGGCaggacacgccgccGUGUCCAAg -3'
miRNA:   3'- -UCUGuCGuUGGCCCUGa------------CGCAGGUUg -5'
11489 5' -55.6 NC_003085.1 + 3733 0.66 0.663171
Target:  5'- cAGGCAGCAcCCGcgcaGGACUuggugagcgGCGUCUAcGCa -3'
miRNA:   3'- -UCUGUCGUuGGC----CCUGA---------CGCAGGU-UG- -5'
11489 5' -55.6 NC_003085.1 + 9459 0.67 0.596374
Target:  5'- uGGACgAGCucgaGGCCGGGcaAUU-CGUCCAGCg -3'
miRNA:   3'- -UCUG-UCG----UUGGCCC--UGAcGCAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 10727 0.68 0.519944
Target:  5'- uGACGGCAAgCGGacGCUGUugcuGUCCGGCc -3'
miRNA:   3'- uCUGUCGUUgGCCc-UGACG----CAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 10829 0.7 0.418416
Target:  5'- cGGGCAGCGACugCGGGAgugggaUGCGagcUCCGGCc -3'
miRNA:   3'- -UCUGUCGUUG--GCCCUg-----ACGC---AGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 11533 0.69 0.488331
Target:  5'- cGGCcGCGcguucgucgagcGCCGGGGCcaUGCG-CCAACg -3'
miRNA:   3'- uCUGuCGU------------UGGCCCUG--ACGCaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 11606 0.68 0.519944
Target:  5'- aGGGCGGCGcgaaggggcuguGCaGGGGCUGCuaCCAGCg -3'
miRNA:   3'- -UCUGUCGU------------UGgCCCUGACGcaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 12965 0.96 0.006876
Target:  5'- cAGACAGCAA-CGGGACUGCGUCCAACc -3'
miRNA:   3'- -UCUGUCGUUgGCCCUGACGCAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 14037 0.69 0.437782
Target:  5'- cGACauuggaGGCGAgCGGGAUgaCGUCCAACg -3'
miRNA:   3'- uCUG------UCGUUgGCCCUGacGCAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 15626 0.68 0.498773
Target:  5'- uGGGcCGGUGGCCGGGcggAgaGCGUCCAcaACa -3'
miRNA:   3'- -UCU-GUCGUUGGCCC---UgaCGCAGGU--UG- -5'
11489 5' -55.6 NC_003085.1 + 17887 0.69 0.477994
Target:  5'- uGACAuggccuGCAACCcaguGGACUGCGUCguaGACg -3'
miRNA:   3'- uCUGU------CGUUGGc---CCUGACGCAGg--UUG- -5'
11489 5' -55.6 NC_003085.1 + 19327 0.66 0.616391
Target:  5'- cGugGGCuGCUGGGGCcggcggcggaugGCGUCCGu- -3'
miRNA:   3'- uCugUCGuUGGCCCUGa-----------CGCAGGUug -5'
11489 5' -55.6 NC_003085.1 + 20105 0.71 0.363576
Target:  5'- -cGCAGguGgCGGGGCUGgaGUCCGGCc -3'
miRNA:   3'- ucUGUCguUgGCCCUGACg-CAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 21027 0.67 0.574254
Target:  5'- cGGACGGCAGCCGcaaucucuGGGCUucCGUCCc-- -3'
miRNA:   3'- -UCUGUCGUUGGC--------CCUGAc-GCAGGuug -5'
11489 5' -55.6 NC_003085.1 + 22036 0.66 0.640911
Target:  5'- aGGGCuGCGcuguACCGGcGAUUGCGcCCGcggGCa -3'
miRNA:   3'- -UCUGuCGU----UGGCC-CUGACGCaGGU---UG- -5'
11489 5' -55.6 NC_003085.1 + 23212 0.77 0.153152
Target:  5'- aAGGCAGUGGCCGGG-CUGC-UCCAGa -3'
miRNA:   3'- -UCUGUCGUUGGCCCuGACGcAGGUUg -5'
11489 5' -55.6 NC_003085.1 + 24705 0.7 0.390367
Target:  5'- uGGACGGCGGCauCGGcGGCUucGCGggugCCAACa -3'
miRNA:   3'- -UCUGUCGUUG--GCC-CUGA--CGCa---GGUUG- -5'
11489 5' -55.6 NC_003085.1 + 26759 0.71 0.381294
Target:  5'- cGGCGGCccuucgccaccAACCGgaugcuGGACUGCG-CCAACg -3'
miRNA:   3'- uCUGUCG-----------UUGGC------CCUGACGCaGGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.