miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11489 5' -55.6 NC_003085.1 + 12965 0.96 0.006876
Target:  5'- cAGACAGCAA-CGGGACUGCGUCCAACc -3'
miRNA:   3'- -UCUGUCGUUgGCCCUGACGCAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 23212 0.77 0.153152
Target:  5'- aAGGCAGUGGCCGGG-CUGC-UCCAGa -3'
miRNA:   3'- -UCUGUCGUUGGCCCuGACGcAGGUUg -5'
11489 5' -55.6 NC_003085.1 + 40840 0.74 0.224372
Target:  5'- uGACGGCGGCCGGG-CUG-G-CCAACc -3'
miRNA:   3'- uCUGUCGUUGGCCCuGACgCaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 28718 0.74 0.224372
Target:  5'- cGGGCAGCAGCCGGucCUggaggGCGuacUCCAGCg -3'
miRNA:   3'- -UCUGUCGUUGGCCcuGA-----CGC---AGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 36861 0.73 0.26269
Target:  5'- uGGCGGCAACCcGGug-GUGUCCGGCa -3'
miRNA:   3'- uCUGUCGUUGGcCCugaCGCAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 49043 0.73 0.26269
Target:  5'- uAGAC-GCGGCCGaGACUgGCGUCCAGg -3'
miRNA:   3'- -UCUGuCGUUGGCcCUGA-CGCAGGUUg -5'
11489 5' -55.6 NC_003085.1 + 44338 0.71 0.338086
Target:  5'- uGGGCGGCGACgCGGGAgaggGCGgCCAAUc -3'
miRNA:   3'- -UCUGUCGUUG-GCCCUga--CGCaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 20105 0.71 0.363576
Target:  5'- -cGCAGguGgCGGGGCUGgaGUCCGGCc -3'
miRNA:   3'- ucUGUCguUgGCCCUGACg-CAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 290 0.71 0.372363
Target:  5'- cGGCGGCAggACCGGG-CgGCcUCCGACc -3'
miRNA:   3'- uCUGUCGU--UGGCCCuGaCGcAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 26759 0.71 0.381294
Target:  5'- cGGCGGCccuucgccaccAACCGgaugcuGGACUGCG-CCAACg -3'
miRNA:   3'- uCUGUCG-----------UUGGC------CCUGACGCaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 24705 0.7 0.390367
Target:  5'- uGGACGGCGGCauCGGcGGCUucGCGggugCCAACa -3'
miRNA:   3'- -UCUGUCGUUG--GCC-CUGA--CGCa---GGUUG- -5'
11489 5' -55.6 NC_003085.1 + 47147 0.7 0.40893
Target:  5'- -aGCGGCGGCCGGuGGCgagGCaggCCAGCg -3'
miRNA:   3'- ucUGUCGUUGGCC-CUGa--CGca-GGUUG- -5'
11489 5' -55.6 NC_003085.1 + 10829 0.7 0.418416
Target:  5'- cGGGCAGCGACugCGGGAgugggaUGCGagcUCCGGCc -3'
miRNA:   3'- -UCUGUCGUUG--GCCCUg-----ACGC---AGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 14037 0.69 0.437782
Target:  5'- cGACauuggaGGCGAgCGGGAUgaCGUCCAACg -3'
miRNA:   3'- uCUG------UCGUUgGCCCUGacGCAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 33872 0.69 0.457652
Target:  5'- aGGACGGCGGCgGGGuuUGCGaCCu-- -3'
miRNA:   3'- -UCUGUCGUUGgCCCugACGCaGGuug -5'
11489 5' -55.6 NC_003085.1 + 17887 0.69 0.477994
Target:  5'- uGACAuggccuGCAACCcaguGGACUGCGUCguaGACg -3'
miRNA:   3'- uCUGU------CGUUGGc---CCUGACGCAGg--UUG- -5'
11489 5' -55.6 NC_003085.1 + 11533 0.69 0.488331
Target:  5'- cGGCcGCGcguucgucgagcGCCGGGGCcaUGCG-CCAACg -3'
miRNA:   3'- uCUGuCGU------------UGGCCCUG--ACGCaGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 15626 0.68 0.498773
Target:  5'- uGGGcCGGUGGCCGGGcggAgaGCGUCCAcaACa -3'
miRNA:   3'- -UCU-GUCGUUGGCCC---UgaCGCAGGU--UG- -5'
11489 5' -55.6 NC_003085.1 + 29478 0.68 0.509312
Target:  5'- cGGCGGCAgggccguacuugGCCaGGaACUGC-UCCAGCa -3'
miRNA:   3'- uCUGUCGU------------UGGcCC-UGACGcAGGUUG- -5'
11489 5' -55.6 NC_003085.1 + 31658 0.68 0.509312
Target:  5'- cAGGCGGC-ACCGGGGCggGCGgUgGAUg -3'
miRNA:   3'- -UCUGUCGuUGGCCCUGa-CGCaGgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.