Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 49043 | 0.73 | 0.26269 |
Target: 5'- uAGAC-GCGGCCGaGACUgGCGUCCAGg -3' miRNA: 3'- -UCUGuCGUUGGCcCUGA-CGCAGGUUg -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 48512 | 0.66 | 0.660949 |
Target: 5'- cGGCAGCGGCCugucuggcacccGGAC-GCGgCCGACg -3' miRNA: 3'- uCUGUCGUUGGc-----------CCUGaCGCaGGUUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 48130 | 0.66 | 0.640911 |
Target: 5'- cGcCAGCAGuCUGGG-CUGCcuccUCCAGCg -3' miRNA: 3'- uCuGUCGUU-GGCCCuGACGc---AGGUUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 47147 | 0.7 | 0.40893 |
Target: 5'- -aGCGGCGGCCGGuGGCgagGCaggCCAGCg -3' miRNA: 3'- ucUGUCGUUGGCC-CUGa--CGca-GGUUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 44338 | 0.71 | 0.338086 |
Target: 5'- uGGGCGGCGACgCGGGAgaggGCGgCCAAUc -3' miRNA: 3'- -UCUGUCGUUG-GCCCUga--CGCaGGUUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 40840 | 0.74 | 0.224372 |
Target: 5'- uGACGGCGGCCGGG-CUG-G-CCAACc -3' miRNA: 3'- uCUGUCGUUGGCCCuGACgCaGGUUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 36861 | 0.73 | 0.26269 |
Target: 5'- uGGCGGCAACCcGGug-GUGUCCGGCa -3' miRNA: 3'- uCUGUCGUUGGcCCugaCGCAGGUUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 35229 | 0.68 | 0.530661 |
Target: 5'- gGGGCuGUAACCGGGcccCUGCuUCCGcuuGCg -3' miRNA: 3'- -UCUGuCGUUGGCCCu--GACGcAGGU---UG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 34511 | 0.67 | 0.596374 |
Target: 5'- cGGAC-GCGugCGGcGACaGCGUCagCAACa -3' miRNA: 3'- -UCUGuCGUugGCC-CUGaCGCAG--GUUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 33872 | 0.69 | 0.457652 |
Target: 5'- aGGACGGCGGCgGGGuuUGCGaCCu-- -3' miRNA: 3'- -UCUGUCGUUGgCCCugACGCaGGuug -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 31658 | 0.68 | 0.509312 |
Target: 5'- cAGGCGGC-ACCGGGGCggGCGgUgGAUg -3' miRNA: 3'- -UCUGUCGuUGGCCCUGa-CGCaGgUUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 30473 | 0.67 | 0.563263 |
Target: 5'- uAGGCGGCGACCuGGAC-GCGacgCCugGACu -3' miRNA: 3'- -UCUGUCGUUGGcCCUGaCGCa--GG--UUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 30341 | 0.66 | 0.663171 |
Target: 5'- cGGAC-GCuguCgCGGGGCgcacugcgGCGUCUAGCa -3' miRNA: 3'- -UCUGuCGuu-G-GCCCUGa-------CGCAGGUUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 29478 | 0.68 | 0.509312 |
Target: 5'- cGGCGGCAgggccguacuugGCCaGGaACUGC-UCCAGCa -3' miRNA: 3'- uCUGUCGU------------UGGcCC-UGACGcAGGUUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 28718 | 0.74 | 0.224372 |
Target: 5'- cGGGCAGCAGCCGGucCUggaggGCGuacUCCAGCg -3' miRNA: 3'- -UCUGUCGUUGGCCcuGA-----CGC---AGGUUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 28021 | 0.67 | 0.585294 |
Target: 5'- cGACGGCua-CGuGGACgGCGUCCu-- -3' miRNA: 3'- uCUGUCGuugGC-CCUGaCGCAGGuug -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 27482 | 0.66 | 0.618619 |
Target: 5'- aAGGgAGCGcuGCCGGGcacCUGCugagCCAACg -3' miRNA: 3'- -UCUgUCGU--UGGCCCu--GACGca--GGUUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 26759 | 0.71 | 0.381294 |
Target: 5'- cGGCGGCccuucgccaccAACCGgaugcuGGACUGCG-CCAACg -3' miRNA: 3'- uCUGUCG-----------UUGGC------CCUGACGCaGGUUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 24705 | 0.7 | 0.390367 |
Target: 5'- uGGACGGCGGCauCGGcGGCUucGCGggugCCAACa -3' miRNA: 3'- -UCUGUCGUUG--GCC-CUGA--CGCa---GGUUG- -5' |
|||||||
11489 | 5' | -55.6 | NC_003085.1 | + | 23212 | 0.77 | 0.153152 |
Target: 5'- aAGGCAGUGGCCGGG-CUGC-UCCAGa -3' miRNA: 3'- -UCUGUCGUUGGCCCuGACGcAGGUUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home