miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11490 5' -59 NC_003085.1 + 12397 1.07 0.000513
Target:  5'- cCUGCAUCCGCACGUCGUCGGCGCCAGc -3'
miRNA:   3'- -GACGUAGGCGUGCAGCAGCCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 11523 0.8 0.061098
Target:  5'- gUGCGguuaccggCCGCGCGuUCGUCGaGCGCCGGg -3'
miRNA:   3'- gACGUa-------GGCGUGC-AGCAGC-CGCGGUC- -5'
11490 5' -59 NC_003085.1 + 26693 0.78 0.085748
Target:  5'- gCUGCcgUCGCcaccgcggcggGCGUCGUCGGCGCgGGu -3'
miRNA:   3'- -GACGuaGGCG-----------UGCAGCAGCCGCGgUC- -5'
11490 5' -59 NC_003085.1 + 35644 0.77 0.101389
Target:  5'- -gGCGUCUGCACGUCa-UGGCGCCAc -3'
miRNA:   3'- gaCGUAGGCGUGCAGcaGCCGCGGUc -5'
11490 5' -59 NC_003085.1 + 823 0.75 0.129955
Target:  5'- gUGCcgCCGCAgGUCGUCGaGCGCg-- -3'
miRNA:   3'- gACGuaGGCGUgCAGCAGC-CGCGguc -5'
11490 5' -59 NC_003085.1 + 25250 0.75 0.141028
Target:  5'- gUGCGcUCCGCGgcgggcguCGUCGUCGGCGCg-- -3'
miRNA:   3'- gACGU-AGGCGU--------GCAGCAGCCGCGguc -5'
11490 5' -59 NC_003085.1 + 43892 0.72 0.210267
Target:  5'- -gGCGUagacguggCGCAcCGUCG-CGGCGCCAGg -3'
miRNA:   3'- gaCGUAg-------GCGU-GCAGCaGCCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 8773 0.71 0.233143
Target:  5'- -aGCAcCCGgACGUCGUCccccuGCGCCGGc -3'
miRNA:   3'- gaCGUaGGCgUGCAGCAGc----CGCGGUC- -5'
11490 5' -59 NC_003085.1 + 31782 0.7 0.278175
Target:  5'- cCUGCcuggCCGCGuCGUCGgucUCaGCGCCAGc -3'
miRNA:   3'- -GACGua--GGCGU-GCAGC---AGcCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 33014 0.7 0.292256
Target:  5'- aCUGCcgUCGCcucgaAUGaCGUCGGCGCCuGg -3'
miRNA:   3'- -GACGuaGGCG-----UGCaGCAGCCGCGGuC- -5'
11490 5' -59 NC_003085.1 + 19041 0.7 0.295138
Target:  5'- gCUGCGUCguggagauuccgcggCGCGCGgCGgagcaGGCGCCGGg -3'
miRNA:   3'- -GACGUAG---------------GCGUGCaGCag---CCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 17605 0.7 0.299503
Target:  5'- gCUGC-UCCGC-CGUgccuucCGUCGcGUGCCGGa -3'
miRNA:   3'- -GACGuAGGCGuGCA------GCAGC-CGCGGUC- -5'
11490 5' -59 NC_003085.1 + 25265 0.69 0.314411
Target:  5'- aCUGCuUCaGCGCGUacUCGGCGCUGGa -3'
miRNA:   3'- -GACGuAGgCGUGCAgcAGCCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 9163 0.69 0.314411
Target:  5'- -cGCcgCCGCGCaGUCcugagucuguggGUCGGCGCgGGu -3'
miRNA:   3'- gaCGuaGGCGUG-CAG------------CAGCCGCGgUC- -5'
11490 5' -59 NC_003085.1 + 44886 0.69 0.321301
Target:  5'- -cGCAUCCGCACGucugcuUCGUCuccucauGGCGUCc- -3'
miRNA:   3'- gaCGUAGGCGUGC------AGCAG-------CCGCGGuc -5'
11490 5' -59 NC_003085.1 + 28612 0.69 0.322073
Target:  5'- -gGCA-CCGCAgCGgCGagcUCGGCGCCGGu -3'
miRNA:   3'- gaCGUaGGCGU-GCaGC---AGCCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 29534 0.69 0.329874
Target:  5'- -aGCGUCUugGCGCGggCGUCGuGCGgCAGg -3'
miRNA:   3'- gaCGUAGG--CGUGCa-GCAGC-CGCgGUC- -5'
11490 5' -59 NC_003085.1 + 10078 0.69 0.329874
Target:  5'- uUGCuUCCGCAUGagccccCGcCGGCGUCGGa -3'
miRNA:   3'- gACGuAGGCGUGCa-----GCaGCCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 16479 0.69 0.329874
Target:  5'- cCUGCGcgCCGCcuuccCGUCGcugaCGGCGCCGa -3'
miRNA:   3'- -GACGUa-GGCGu----GCAGCa---GCCGCGGUc -5'
11490 5' -59 NC_003085.1 + 2097 0.69 0.337813
Target:  5'- -aGCcgCCGCACcUCGgcgccaUCGGCGCCc- -3'
miRNA:   3'- gaCGuaGGCGUGcAGC------AGCCGCGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.