miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11490 5' -59 NC_003085.1 + 11788 0.66 0.482708
Target:  5'- -cGCGcUCCGgGCGU-GUCGGCugccccaucGCCGGg -3'
miRNA:   3'- gaCGU-AGGCgUGCAgCAGCCG---------CGGUC- -5'
11490 5' -59 NC_003085.1 + 8584 0.68 0.370944
Target:  5'- -gGCAUgCCGC-CGUCGUCcGaGCGCguGg -3'
miRNA:   3'- gaCGUA-GGCGuGCAGCAG-C-CGCGguC- -5'
11490 5' -59 NC_003085.1 + 937 0.68 0.370944
Target:  5'- -aGCGUCgGC-CG-CGUCcgGGUGCCAGa -3'
miRNA:   3'- gaCGUAGgCGuGCaGCAG--CCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 3847 0.68 0.397208
Target:  5'- aCUGCccAUCCaggaccacgGCGCGUCGaCGGCGCg-- -3'
miRNA:   3'- -GACG--UAGG---------CGUGCAGCaGCCGCGguc -5'
11490 5' -59 NC_003085.1 + 41553 0.67 0.415368
Target:  5'- gCUGCcgCCGCGgcggcaGUCG-CGGgaGCCAGa -3'
miRNA:   3'- -GACGuaGGCGUg-----CAGCaGCCg-CGGUC- -5'
11490 5' -59 NC_003085.1 + 20952 0.67 0.434029
Target:  5'- -cGCGUCUGCACGagGUgCGGUgGCUGGc -3'
miRNA:   3'- gaCGUAGGCGUGCagCA-GCCG-CGGUC- -5'
11490 5' -59 NC_003085.1 + 36958 0.67 0.44354
Target:  5'- -gGCAgggCCGCGgGgccaUGUUGGCGCCGc -3'
miRNA:   3'- gaCGUa--GGCGUgCa---GCAGCCGCGGUc -5'
11490 5' -59 NC_003085.1 + 49287 0.67 0.44354
Target:  5'- cCUGUggCUGCuGCGUCGcgUCGGCGucCCGGg -3'
miRNA:   3'- -GACGuaGGCG-UGCAGC--AGCCGC--GGUC- -5'
11490 5' -59 NC_003085.1 + 19999 0.66 0.472755
Target:  5'- cCUGCcgCCGU-CGUCGUgGG-GCCGc -3'
miRNA:   3'- -GACGuaGGCGuGCAGCAgCCgCGGUc -5'
11490 5' -59 NC_003085.1 + 48735 0.68 0.354105
Target:  5'- -cGCcuGUCCGUgaGCGgcgCGUCaGGCGCCAc -3'
miRNA:   3'- gaCG--UAGGCG--UGCa--GCAG-CCGCGGUc -5'
11490 5' -59 NC_003085.1 + 42017 0.68 0.354105
Target:  5'- -gGCGUCgGCACGgaCGagGGCGCCu- -3'
miRNA:   3'- gaCGUAGgCGUGCa-GCagCCGCGGuc -5'
11490 5' -59 NC_003085.1 + 2097 0.69 0.337813
Target:  5'- -aGCcgCCGCACcUCGgcgccaUCGGCGCCc- -3'
miRNA:   3'- gaCGuaGGCGUGcAGC------AGCCGCGGuc -5'
11490 5' -59 NC_003085.1 + 823 0.75 0.129955
Target:  5'- gUGCcgCCGCAgGUCGUCGaGCGCg-- -3'
miRNA:   3'- gACGuaGGCGUgCAGCAGC-CGCGguc -5'
11490 5' -59 NC_003085.1 + 25250 0.75 0.141028
Target:  5'- gUGCGcUCCGCGgcgggcguCGUCGUCGGCGCg-- -3'
miRNA:   3'- gACGU-AGGCGU--------GCAGCAGCCGCGguc -5'
11490 5' -59 NC_003085.1 + 19041 0.7 0.295138
Target:  5'- gCUGCGUCguggagauuccgcggCGCGCGgCGgagcaGGCGCCGGg -3'
miRNA:   3'- -GACGUAG---------------GCGUGCaGCag---CCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 17605 0.7 0.299503
Target:  5'- gCUGC-UCCGC-CGUgccuucCGUCGcGUGCCGGa -3'
miRNA:   3'- -GACGuAGGCGuGCA------GCAGC-CGCGGUC- -5'
11490 5' -59 NC_003085.1 + 9163 0.69 0.314411
Target:  5'- -cGCcgCCGCGCaGUCcugagucuguggGUCGGCGCgGGu -3'
miRNA:   3'- gaCGuaGGCGUG-CAG------------CAGCCGCGgUC- -5'
11490 5' -59 NC_003085.1 + 44886 0.69 0.321301
Target:  5'- -cGCAUCCGCACGucugcuUCGUCuccucauGGCGUCc- -3'
miRNA:   3'- gaCGUAGGCGUGC------AGCAG-------CCGCGGuc -5'
11490 5' -59 NC_003085.1 + 16479 0.69 0.329874
Target:  5'- cCUGCGcgCCGCcuuccCGUCGcugaCGGCGCCGa -3'
miRNA:   3'- -GACGUa-GGCGu----GCAGCa---GCCGCGGUc -5'
11490 5' -59 NC_003085.1 + 10078 0.69 0.329874
Target:  5'- uUGCuUCCGCAUGagccccCGcCGGCGUCGGa -3'
miRNA:   3'- gACGuAGGCGUGCa-----GCaGCCGCGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.