miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11492 5' -55.9 NC_003085.1 + 11127 0.66 0.636986
Target:  5'- -aGUUGCGcGuGCcAGGCCCGAGCUUuagGCa -3'
miRNA:   3'- ggCAGUGU-C-CGuUUCGGGCUCGAG---CG- -5'
11492 5' -55.9 NC_003085.1 + 11170 1.14 0.00036
Target:  5'- gCCGUCACAGGCAAAGCCCGAGCUCGCg -3'
miRNA:   3'- -GGCAGUGUCCGUUUCGGGCUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 12018 0.66 0.691629
Target:  5'- gCgGUgGCGGGCGcgGGGUUgGcGCUCGCu -3'
miRNA:   3'- -GgCAgUGUCCGU--UUCGGgCuCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 14200 0.67 0.615025
Target:  5'- gCGUC-CGGGCugcgacAAGCCCGcGCgcaaGCg -3'
miRNA:   3'- gGCAGuGUCCGu-----UUCGGGCuCGag--CG- -5'
11492 5' -55.9 NC_003085.1 + 15532 0.76 0.192568
Target:  5'- aCUGgCGCAGGCGguuGAGCCCGAGUacuccagUUGCg -3'
miRNA:   3'- -GGCaGUGUCCGU---UUCGGGCUCG-------AGCG- -5'
11492 5' -55.9 NC_003085.1 + 16379 0.66 0.680771
Target:  5'- uCCaggCGCGGGCAAAGUuggcaggugUCGAGggCGCg -3'
miRNA:   3'- -GGca-GUGUCCGUUUCG---------GGCUCgaGCG- -5'
11492 5' -55.9 NC_003085.1 + 16565 0.66 0.691629
Target:  5'- aCGUCGaAGGCGGacGGcCCCGAuGCUC-Ca -3'
miRNA:   3'- gGCAGUgUCCGUU--UC-GGGCU-CGAGcG- -5'
11492 5' -55.9 NC_003085.1 + 17198 0.68 0.55946
Target:  5'- -aGUCcCGGGCcaccGAGGCCUGGGCgcuguaccaagacUCGCu -3'
miRNA:   3'- ggCAGuGUCCG----UUUCGGGCUCG-------------AGCG- -5'
11492 5' -55.9 NC_003085.1 + 17579 0.71 0.381454
Target:  5'- uCCG-CAC-GGCAucGCggaCGAGCUCGUa -3'
miRNA:   3'- -GGCaGUGuCCGUuuCGg--GCUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 17641 0.66 0.658928
Target:  5'- cCUG-CGCAGGCGuGAGCCaCGGGagggaggCGCu -3'
miRNA:   3'- -GGCaGUGUCCGU-UUCGG-GCUCga-----GCG- -5'
11492 5' -55.9 NC_003085.1 + 17975 0.67 0.626003
Target:  5'- gCCGgcagCGCGGGCcgcAGGGCaCgGAGCU-GCg -3'
miRNA:   3'- -GGCa---GUGUCCG---UUUCG-GgCUCGAgCG- -5'
11492 5' -55.9 NC_003085.1 + 19202 0.68 0.560539
Target:  5'- uCCGcCugGGGCGgcgGGGgCUGGGCgccgCGCa -3'
miRNA:   3'- -GGCaGugUCCGU---UUCgGGCUCGa---GCG- -5'
11492 5' -55.9 NC_003085.1 + 19457 0.68 0.517923
Target:  5'- aCGUCGCcaAGGCc--GCCCaGGGC-CGCu -3'
miRNA:   3'- gGCAGUG--UCCGuuuCGGG-CUCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 19790 0.66 0.633691
Target:  5'- aCGUCGCgAGGUGGAcGCCCGAcaugacuucuguggGCagGCg -3'
miRNA:   3'- gGCAGUG-UCCGUUU-CGGGCU--------------CGagCG- -5'
11492 5' -55.9 NC_003085.1 + 20827 0.74 0.238462
Target:  5'- aCGcCAUccuggaugAGGCGAccGGCgCCGAGCUCGCc -3'
miRNA:   3'- gGCaGUG--------UCCGUU--UCG-GGCUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 21524 0.68 0.535893
Target:  5'- gUCGUCGCGGcGCugacgucccugcguGAcuaccGGCgCGAGCUCGUg -3'
miRNA:   3'- -GGCAGUGUC-CG--------------UU-----UCGgGCUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 21864 0.73 0.299801
Target:  5'- gCGUCG-AGGUGAAGCCCGAGgC-CGUg -3'
miRNA:   3'- gGCAGUgUCCGUUUCGGGCUC-GaGCG- -5'
11492 5' -55.9 NC_003085.1 + 22111 0.68 0.539088
Target:  5'- gCCGcC-CA-GCAGAGCCCGGcGC-CGCa -3'
miRNA:   3'- -GGCaGuGUcCGUUUCGGGCU-CGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 22448 0.74 0.257654
Target:  5'- gCG-CGCAGGCAcaccaAGGCCCGuGCaccacUCGCg -3'
miRNA:   3'- gGCaGUGUCCGU-----UUCGGGCuCG-----AGCG- -5'
11492 5' -55.9 NC_003085.1 + 22492 0.67 0.582218
Target:  5'- gCCGgcugCGCAGGCcGAGCUCGGa--CGCg -3'
miRNA:   3'- -GGCa---GUGUCCGuUUCGGGCUcgaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.