miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11492 5' -55.9 NC_003085.1 + 488 0.67 0.615025
Target:  5'- ---cCACGGGCGAGGCUgaGGGCcUGCg -3'
miRNA:   3'- ggcaGUGUCCGUUUCGGg-CUCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 565 0.67 0.615025
Target:  5'- gCCGUCGaagugcaGGGC-GAGCCCccGC-CGCa -3'
miRNA:   3'- -GGCAGUg------UCCGuUUCGGGcuCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 613 0.67 0.571353
Target:  5'- gCCGUCcUGGGCGc-GCUCGAGgCUgGCg -3'
miRNA:   3'- -GGCAGuGUCCGUuuCGGGCUC-GAgCG- -5'
11492 5' -55.9 NC_003085.1 + 695 0.69 0.476656
Target:  5'- gCGUCcggccuCGGGCGcGGCCUGAGCagGUc -3'
miRNA:   3'- gGCAGu-----GUCCGUuUCGGGCUCGagCG- -5'
11492 5' -55.9 NC_003085.1 + 1749 0.73 0.299801
Target:  5'- cCCGUCAgCAGGCGcAGCagucgaCGA-CUCGCa -3'
miRNA:   3'- -GGCAGU-GUCCGUuUCGg-----GCUcGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 2051 0.67 0.615025
Target:  5'- cCCGUCACcauGGaugcCAAGGCCCGgacGGUgaCGCg -3'
miRNA:   3'- -GGCAGUGu--CC----GUUUCGGGC---UCGa-GCG- -5'
11492 5' -55.9 NC_003085.1 + 2355 0.72 0.322798
Target:  5'- uCCGggaggCGCAGuGCGAGGCCgcggcgcgCGAGCucUCGCa -3'
miRNA:   3'- -GGCa----GUGUC-CGUUUCGG--------GCUCG--AGCG- -5'
11492 5' -55.9 NC_003085.1 + 3190 0.76 0.187976
Target:  5'- gCCGUCcucucGCGGGCccuGGCCCGAuGC-CGCa -3'
miRNA:   3'- -GGCAG-----UGUCCGuu-UCGGGCU-CGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 3890 0.67 0.604063
Target:  5'- uCUGUCGCGguGGCAcuGCUCGuGCU-GCg -3'
miRNA:   3'- -GGCAGUGU--CCGUuuCGGGCuCGAgCG- -5'
11492 5' -55.9 NC_003085.1 + 4658 0.68 0.549781
Target:  5'- cCCGguggCAgAGGCGAgccuuucacGGCgCCGAGUUgCGCc -3'
miRNA:   3'- -GGCa---GUgUCCGUU---------UCG-GGCUCGA-GCG- -5'
11492 5' -55.9 NC_003085.1 + 5205 0.72 0.347085
Target:  5'- ----gGCAGGCcGAGUCCGAGCgcgaCGCg -3'
miRNA:   3'- ggcagUGUCCGuUUCGGGCUCGa---GCG- -5'
11492 5' -55.9 NC_003085.1 + 7036 0.66 0.658928
Target:  5'- cUCG-CGCGGGguGGGCgaUGAGCcCGCg -3'
miRNA:   3'- -GGCaGUGUCCguUUCGg-GCUCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 7063 0.71 0.355466
Target:  5'- aCGUCAUggacgaggAGGaCAAGGCCCGcGCUCa- -3'
miRNA:   3'- gGCAGUG--------UCC-GUUUCGGGCuCGAGcg -5'
11492 5' -55.9 NC_003085.1 + 7543 0.72 0.314988
Target:  5'- gCCGUgggCACGGGCuacacGCCCGAGaaugCGCu -3'
miRNA:   3'- -GGCA---GUGUCCGuuu--CGGGCUCga--GCG- -5'
11492 5' -55.9 NC_003085.1 + 8065 0.66 0.691629
Target:  5'- aCCGaguCAGGCAuGGCCgguacaUGAGCggagCGCa -3'
miRNA:   3'- -GGCaguGUCCGUuUCGG------GCUCGa---GCG- -5'
11492 5' -55.9 NC_003085.1 + 8093 0.67 0.582218
Target:  5'- aCCGUCAUgacguGGGUGAcgcGGCCCG-GCcUGCc -3'
miRNA:   3'- -GGCAGUG-----UCCGUU---UCGGGCuCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 8559 0.71 0.390394
Target:  5'- cUCGUCAC-GGCAGGuCuuGAGgUCGCg -3'
miRNA:   3'- -GGCAGUGuCCGUUUcGggCUCgAGCG- -5'
11492 5' -55.9 NC_003085.1 + 9124 0.66 0.633691
Target:  5'- gCUGUCGCGaccucucugggagcGGCAccuGgCgGAGCUCGCc -3'
miRNA:   3'- -GGCAGUGU--------------CCGUuu-CgGgCUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 9816 0.72 0.347085
Target:  5'- -gGUU-CAGGcCAGAGCCCGAGUugcugucguucaUCGCg -3'
miRNA:   3'- ggCAGuGUCC-GUUUCGGGCUCG------------AGCG- -5'
11492 5' -55.9 NC_003085.1 + 10621 0.66 0.691629
Target:  5'- gCCGUCGCAgugggacgacgcGGCAGugcGCCCu-GCUCa- -3'
miRNA:   3'- -GGCAGUGU------------CCGUUu--CGGGcuCGAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.