miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11492 5' -55.9 NC_003085.1 + 11170 1.14 0.00036
Target:  5'- gCCGUCACAGGCAAAGCCCGAGCUCGCg -3'
miRNA:   3'- -GGCAGUGUCCGUUUCGGGCUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 27893 0.82 0.074796
Target:  5'- cCCGUCACcuGGuGCAGGGCguccaCGAGCUCGCg -3'
miRNA:   3'- -GGCAGUG--UC-CGUUUCGg----GCUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 34305 0.8 0.093998
Target:  5'- gCGUCGCGGGCAGGGCaCCGAGg-CGUc -3'
miRNA:   3'- gGCAGUGUCCGUUUCG-GGCUCgaGCG- -5'
11492 5' -55.9 NC_003085.1 + 38603 0.79 0.108283
Target:  5'- gCGUCcagcGCAGGaaGAGGCCgGAGCUCGCa -3'
miRNA:   3'- gGCAG----UGUCCg-UUUCGGgCUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 3190 0.76 0.187976
Target:  5'- gCCGUCcucucGCGGGCccuGGCCCGAuGC-CGCa -3'
miRNA:   3'- -GGCAG-----UGUCCGuu-UCGGGCU-CGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 15532 0.76 0.192568
Target:  5'- aCUGgCGCAGGCGguuGAGCCCGAGUacuccagUUGCg -3'
miRNA:   3'- -GGCaGUGUCCGU---UUCGGGCUCG-------AGCG- -5'
11492 5' -55.9 NC_003085.1 + 44852 0.74 0.232335
Target:  5'- cCCGUCACGacgaaaacGGCAGGGCCCucGCaacCGCa -3'
miRNA:   3'- -GGCAGUGU--------CCGUUUCGGGcuCGa--GCG- -5'
11492 5' -55.9 NC_003085.1 + 43908 0.74 0.238462
Target:  5'- aCCGUCGCGGcGCcAGGCCCuuuGCgCGCa -3'
miRNA:   3'- -GGCAGUGUC-CGuUUCGGGcu-CGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 20827 0.74 0.238462
Target:  5'- aCGcCAUccuggaugAGGCGAccGGCgCCGAGCUCGCc -3'
miRNA:   3'- gGCaGUG--------UCCGUU--UCG-GGCUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 22448 0.74 0.257654
Target:  5'- gCG-CGCAGGCAcaccaAGGCCCGuGCaccacUCGCg -3'
miRNA:   3'- gGCaGUGUCCGU-----UUCGGGCuCG-----AGCG- -5'
11492 5' -55.9 NC_003085.1 + 23317 0.74 0.264327
Target:  5'- aCGUCGguGGCcagcAGCCCGAGUUC-Ca -3'
miRNA:   3'- gGCAGUguCCGuu--UCGGGCUCGAGcG- -5'
11492 5' -55.9 NC_003085.1 + 1749 0.73 0.299801
Target:  5'- cCCGUCAgCAGGCGcAGCagucgaCGA-CUCGCa -3'
miRNA:   3'- -GGCAGU-GUCCGUuUCGg-----GCUcGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 21864 0.73 0.299801
Target:  5'- gCGUCG-AGGUGAAGCCCGAGgC-CGUg -3'
miRNA:   3'- gGCAGUgUCCGUUUCGGGCUC-GaGCG- -5'
11492 5' -55.9 NC_003085.1 + 7543 0.72 0.314988
Target:  5'- gCCGUgggCACGGGCuacacGCCCGAGaaugCGCu -3'
miRNA:   3'- -GGCA---GUGUCCGuuu--CGGGCUCga--GCG- -5'
11492 5' -55.9 NC_003085.1 + 2355 0.72 0.322798
Target:  5'- uCCGggaggCGCAGuGCGAGGCCgcggcgcgCGAGCucUCGCa -3'
miRNA:   3'- -GGCa----GUGUC-CGUUUCGG--------GCUCG--AGCG- -5'
11492 5' -55.9 NC_003085.1 + 25083 0.72 0.322798
Target:  5'- cCCGUC-CAGGCcauugauGGCCCG-GC-CGCc -3'
miRNA:   3'- -GGCAGuGUCCGuu-----UCGGGCuCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 40482 0.72 0.33075
Target:  5'- cCUGUCGCugcuGGCGggcgucgucGAGCCgGAGC-CGCu -3'
miRNA:   3'- -GGCAGUGu---CCGU---------UUCGGgCUCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 35379 0.72 0.33075
Target:  5'- aCGUUcucCcGGCGGAGUCCGAggcGCUCGCa -3'
miRNA:   3'- gGCAGu--GuCCGUUUCGGGCU---CGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 29180 0.72 0.338846
Target:  5'- cCCG-CAguGGCAgcGCCgCGAGgaCGCg -3'
miRNA:   3'- -GGCaGUguCCGUuuCGG-GCUCgaGCG- -5'
11492 5' -55.9 NC_003085.1 + 5205 0.72 0.347085
Target:  5'- ----gGCAGGCcGAGUCCGAGCgcgaCGCg -3'
miRNA:   3'- ggcagUGUCCGuUUCGGGCUCGa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.