miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11492 5' -55.9 NC_003085.1 + 613 0.67 0.571353
Target:  5'- gCCGUCcUGGGCGc-GCUCGAGgCUgGCg -3'
miRNA:   3'- -GGCAGuGUCCGUuuCGGGCUC-GAgCG- -5'
11492 5' -55.9 NC_003085.1 + 695 0.69 0.476656
Target:  5'- gCGUCcggccuCGGGCGcGGCCUGAGCagGUc -3'
miRNA:   3'- gGCAGu-----GUCCGUuUCGGGCUCGagCG- -5'
11492 5' -55.9 NC_003085.1 + 45861 0.69 0.497097
Target:  5'- aCGUC-CAGGCGGAGCCggugGGGCUg-- -3'
miRNA:   3'- gGCAGuGUCCGUUUCGGg---CUCGAgcg -5'
11492 5' -55.9 NC_003085.1 + 48885 0.69 0.507465
Target:  5'- gCCGcaCACGGaGCAuuGCCCGccAGC-CGCg -3'
miRNA:   3'- -GGCa-GUGUC-CGUuuCGGGC--UCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 21524 0.68 0.535893
Target:  5'- gUCGUCGCGGcGCugacgucccugcguGAcuaccGGCgCGAGCUCGUg -3'
miRNA:   3'- -GGCAGUGUC-CG--------------UU-----UCGgGCUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 22111 0.68 0.539088
Target:  5'- gCCGcC-CA-GCAGAGCCCGGcGC-CGCa -3'
miRNA:   3'- -GGCaGuGUcCGUUUCGGGCU-CGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 47114 0.68 0.539088
Target:  5'- cCCGUCGCgcuggacgGGaGCAAGGCCCac-CUUGCg -3'
miRNA:   3'- -GGCAGUG--------UC-CGUUUCGGGcucGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 17198 0.68 0.55946
Target:  5'- -aGUCcCGGGCcaccGAGGCCUGGGCgcuguaccaagacUCGCu -3'
miRNA:   3'- ggCAGuGUCCG----UUUCGGGCUCG-------------AGCG- -5'
11492 5' -55.9 NC_003085.1 + 43602 0.67 0.569186
Target:  5'- -gGUCGCAGGCGcuGCCaucccgagugcaGAGCggGCa -3'
miRNA:   3'- ggCAGUGUCCGUuuCGGg-----------CUCGagCG- -5'
11492 5' -55.9 NC_003085.1 + 31780 0.71 0.381454
Target:  5'- gCGUgCGguUGGGCGAagcGGCCCGGccGCUCGCg -3'
miRNA:   3'- gGCA-GU--GUCCGUU---UCGGGCU--CGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 23659 0.71 0.363989
Target:  5'- gCCG-CGCAGGCGAAcgccGCCCaGGCguccaCGCa -3'
miRNA:   3'- -GGCaGUGUCCGUUU----CGGGcUCGa----GCG- -5'
11492 5' -55.9 NC_003085.1 + 9816 0.72 0.347085
Target:  5'- -gGUU-CAGGcCAGAGCCCGAGUugcugucguucaUCGCg -3'
miRNA:   3'- ggCAGuGUCC-GUUUCGGGCUCG------------AGCG- -5'
11492 5' -55.9 NC_003085.1 + 3190 0.76 0.187976
Target:  5'- gCCGUCcucucGCGGGCccuGGCCCGAuGC-CGCa -3'
miRNA:   3'- -GGCAG-----UGUCCGuu-UCGGGCU-CGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 15532 0.76 0.192568
Target:  5'- aCUGgCGCAGGCGguuGAGCCCGAGUacuccagUUGCg -3'
miRNA:   3'- -GGCaGUGUCCGU---UUCGGGCUCG-------AGCG- -5'
11492 5' -55.9 NC_003085.1 + 44852 0.74 0.232335
Target:  5'- cCCGUCACGacgaaaacGGCAGGGCCCucGCaacCGCa -3'
miRNA:   3'- -GGCAGUGU--------CCGUUUCGGGcuCGa--GCG- -5'
11492 5' -55.9 NC_003085.1 + 20827 0.74 0.238462
Target:  5'- aCGcCAUccuggaugAGGCGAccGGCgCCGAGCUCGCc -3'
miRNA:   3'- gGCaGUG--------UCCGUU--UCG-GGCUCGAGCG- -5'
11492 5' -55.9 NC_003085.1 + 21864 0.73 0.299801
Target:  5'- gCGUCG-AGGUGAAGCCCGAGgC-CGUg -3'
miRNA:   3'- gGCAGUgUCCGUUUCGGGCUC-GaGCG- -5'
11492 5' -55.9 NC_003085.1 + 2355 0.72 0.322798
Target:  5'- uCCGggaggCGCAGuGCGAGGCCgcggcgcgCGAGCucUCGCa -3'
miRNA:   3'- -GGCa----GUGUC-CGUUUCGG--------GCUCG--AGCG- -5'
11492 5' -55.9 NC_003085.1 + 40482 0.72 0.33075
Target:  5'- cCUGUCGCugcuGGCGggcgucgucGAGCCgGAGC-CGCu -3'
miRNA:   3'- -GGCAGUGu---CCGU---------UUCGGgCUCGaGCG- -5'
11492 5' -55.9 NC_003085.1 + 29180 0.72 0.338846
Target:  5'- cCCG-CAguGGCAgcGCCgCGAGgaCGCg -3'
miRNA:   3'- -GGCaGUguCCGUuuCGG-GCUCgaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.