miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11498 3' -53 NC_003085.1 + 26124 0.66 0.853868
Target:  5'- cGGC-CG-GCGgcGCUUGgccgGCCAgagCGGc -3'
miRNA:   3'- -CCGuGCuCGCuuUGAGCa---CGGUa--GCC- -5'
11498 3' -53 NC_003085.1 + 34191 0.73 0.437148
Target:  5'- gGGCGCG-GCGGgugAGCUCG-GCCG-CGGc -3'
miRNA:   3'- -CCGUGCuCGCU---UUGAGCaCGGUaGCC- -5'
11498 3' -53 NC_003085.1 + 26224 0.79 0.201795
Target:  5'- cGGCGCGGuGCGAAGCgCGgcgGCCGUCuGGa -3'
miRNA:   3'- -CCGUGCU-CGCUUUGaGCa--CGGUAG-CC- -5'
11498 3' -53 NC_003085.1 + 9390 1.14 0.000771
Target:  5'- cGGCACGAGCGAAACUCGUGCCAUCGGg -3'
miRNA:   3'- -CCGUGCUCGCUUUGAGCACGGUAGCC- -5'
11498 3' -53 NC_003085.1 + 37896 0.66 0.818123
Target:  5'- aGGCGCGGGCaGGACg-GUG-CGUUGGc -3'
miRNA:   3'- -CCGUGCUCGcUUUGagCACgGUAGCC- -5'
11498 3' -53 NC_003085.1 + 32904 0.67 0.799017
Target:  5'- uGGC-CGGGCGccacgcaguuGGAgUCGcUGCCuUCGGg -3'
miRNA:   3'- -CCGuGCUCGC----------UUUgAGC-ACGGuAGCC- -5'
11498 3' -53 NC_003085.1 + 29424 0.67 0.769054
Target:  5'- gGGCGCGGGCGGcGGCaa-UGCCGUCc- -3'
miRNA:   3'- -CCGUGCUCGCU-UUGagcACGGUAGcc -5'
11498 3' -53 NC_003085.1 + 37109 0.67 0.762897
Target:  5'- cGGCAC-AGCGAcaccauguGGCgCGUGCCcuugcccagguucggGUCGGu -3'
miRNA:   3'- -CCGUGcUCGCU--------UUGaGCACGG---------------UAGCC- -5'
11498 3' -53 NC_003085.1 + 48750 0.68 0.728218
Target:  5'- aGGCGCGGGUGGAccuGCUCaggccgcgcccgagGCCGgacgCGGg -3'
miRNA:   3'- -CCGUGCUCGCUU---UGAGca------------CGGUa---GCC- -5'
11498 3' -53 NC_003085.1 + 36600 0.71 0.540374
Target:  5'- gGGCACGGGUGGcggaagggcAACUugCGUGgCAUUGGc -3'
miRNA:   3'- -CCGUGCUCGCU---------UUGA--GCACgGUAGCC- -5'
11498 3' -53 NC_003085.1 + 42057 0.68 0.705568
Target:  5'- gGGCcCcAGUcGGACUCGUGCCAguucacgCGGg -3'
miRNA:   3'- -CCGuGcUCGcUUUGAGCACGGUa------GCC- -5'
11498 3' -53 NC_003085.1 + 31866 0.68 0.737799
Target:  5'- aGGCACG-GCGGAGCagcaggCGUGUCAccccgaagcCGGa -3'
miRNA:   3'- -CCGUGCuCGCUUUGa-----GCACGGUa--------GCC- -5'
11498 3' -53 NC_003085.1 + 18014 0.66 0.845264
Target:  5'- cGGCGCGAGgcCGua---CGUGCCAUCc- -3'
miRNA:   3'- -CCGUGCUC--GCuuugaGCACGGUAGcc -5'
11498 3' -53 NC_003085.1 + 26722 0.69 0.694663
Target:  5'- cGGCGCGGGUgucGGAGCcgaGUGCUucUCGGc -3'
miRNA:   3'- -CCGUGCUCG---CUUUGag-CACGGu-AGCC- -5'
11498 3' -53 NC_003085.1 + 3356 0.66 0.827382
Target:  5'- cGCAUGGGUGAgccagaauccGACccagCGgcucGCCGUCGGu -3'
miRNA:   3'- cCGUGCUCGCU----------UUGa---GCa---CGGUAGCC- -5'
11498 3' -53 NC_003085.1 + 4760 0.67 0.758764
Target:  5'- cGGUugGAGUGAcGACUUucgGCUcUCGGg -3'
miRNA:   3'- -CCGugCUCGCU-UUGAGca-CGGuAGCC- -5'
11498 3' -53 NC_003085.1 + 26673 0.69 0.661623
Target:  5'- gGGCGgGAGCGGccguuGC-CGcUGCCGUCGc -3'
miRNA:   3'- -CCGUgCUCGCUu----UGaGC-ACGGUAGCc -5'
11498 3' -53 NC_003085.1 + 18118 0.74 0.408423
Target:  5'- cGGCGCGGGCGGGACggcCG-GCC-UgGGa -3'
miRNA:   3'- -CCGUGCUCGCUUUGa--GCaCGGuAgCC- -5'
11498 3' -53 NC_003085.1 + 29541 0.66 0.827382
Target:  5'- uGGCGCGGGCGucguGCggcaggaCGUGCUugagguagCGGu -3'
miRNA:   3'- -CCGUGCUCGCuu--UGa------GCACGGua------GCC- -5'
11498 3' -53 NC_003085.1 + 35577 0.67 0.789192
Target:  5'- cGGUugGAGCaguaGAGCUUGcggcuUGCCGggcgCGGg -3'
miRNA:   3'- -CCGugCUCGc---UUUGAGC-----ACGGUa---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.