miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11500 3' -56.3 NC_003085.1 + 28112 0.66 0.650552
Target:  5'- -aGCgCGcGCCAGaAGCAGgugcaguugcugcggCCGACGCUg -3'
miRNA:   3'- agUG-GCaCGGUC-UCGUCa--------------GGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 40481 0.66 0.649451
Target:  5'- cUACCGgGCCGGuGaAGUCCGcgAgGCCg -3'
miRNA:   3'- aGUGGCaCGGUCuCgUCAGGU--UgCGG- -5'
11500 3' -56.3 NC_003085.1 + 43944 0.66 0.649451
Target:  5'- gCACCaGUGC--GAGCAcGUgCCGACGCg -3'
miRNA:   3'- aGUGG-CACGguCUCGU-CA-GGUUGCGg -5'
11500 3' -56.3 NC_003085.1 + 35700 0.66 0.649451
Target:  5'- aCGCCGa-CCAGuGUucGUCCAACgGCCu -3'
miRNA:   3'- aGUGGCacGGUCuCGu-CAGGUUG-CGG- -5'
11500 3' -56.3 NC_003085.1 + 49197 0.66 0.642842
Target:  5'- cUCACCGUGCuCAgcuucguaggccucGAugaagagcuuacagGCAGUCCGcaugACGUCg -3'
miRNA:   3'- -AGUGGCACG-GU--------------CU--------------CGUCAGGU----UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 4120 0.66 0.638435
Target:  5'- gCGCCGcGCUGG-Gac-UCCAGCGCCg -3'
miRNA:   3'- aGUGGCaCGGUCuCgucAGGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 25391 0.66 0.638435
Target:  5'- uUCACCGUcGuCCAGAugucGC-GUCCGGC-CCu -3'
miRNA:   3'- -AGUGGCA-C-GGUCU----CGuCAGGUUGcGG- -5'
11500 3' -56.3 NC_003085.1 + 11128 0.66 0.638435
Target:  5'- gUUGCgCGUGCCAggcccGAGCuuuAGgcaCGACGCCa -3'
miRNA:   3'- -AGUG-GCACGGU-----CUCG---UCag-GUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 34574 0.66 0.638435
Target:  5'- gCGCCGcacaGCCAGguugaAGguGUCCGGCaGCa -3'
miRNA:   3'- aGUGGCa---CGGUC-----UCguCAGGUUG-CGg -5'
11500 3' -56.3 NC_003085.1 + 14028 0.66 0.637332
Target:  5'- gCAUCGcGCCGacauuggaggcGAGCGggaugacGUCCAACGUCg -3'
miRNA:   3'- aGUGGCaCGGU-----------CUCGU-------CAGGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 19949 0.66 0.631822
Target:  5'- aCGCUggugacggcuccucaGUGCUGGAGCAGUUCcugGCCa -3'
miRNA:   3'- aGUGG---------------CACGGUCUCGUCAGGuugCGG- -5'
11500 3' -56.3 NC_003085.1 + 4096 0.66 0.627413
Target:  5'- --uCUGgguggGCCGG-GCGGUCCAGgcUGCCa -3'
miRNA:   3'- aguGGCa----CGGUCuCGUCAGGUU--GCGG- -5'
11500 3' -56.3 NC_003085.1 + 11298 0.66 0.625209
Target:  5'- aCACCuGcGCCGcGGCGGggagcgccaccaCCAACGCCa -3'
miRNA:   3'- aGUGG-CaCGGUcUCGUCa-----------GGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 8795 0.66 0.620801
Target:  5'- gCGCCGgcggcuccgcgagguUGCgCGGcGCAG-CCAGCGUCa -3'
miRNA:   3'- aGUGGC---------------ACG-GUCuCGUCaGGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 15031 0.66 0.616395
Target:  5'- cCGCUGgGCCGGcccaagccGCAGcCCAGgGCCa -3'
miRNA:   3'- aGUGGCaCGGUCu-------CGUCaGGUUgCGG- -5'
11500 3' -56.3 NC_003085.1 + 38075 0.66 0.616395
Target:  5'- gUCGCgGagacGgCAGcgcAGguGUCCGGCGCCg -3'
miRNA:   3'- -AGUGgCa---CgGUC---UCguCAGGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 3404 0.66 0.605392
Target:  5'- gCGCCGaaggGCgGGuGCAG-CCGuaucGCGCCu -3'
miRNA:   3'- aGUGGCa---CGgUCuCGUCaGGU----UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 12336 0.66 0.605392
Target:  5'- gUCGCCGUGCCc-GGCGugaCggUGCCa -3'
miRNA:   3'- -AGUGGCACGGucUCGUcagGuuGCGG- -5'
11500 3' -56.3 NC_003085.1 + 7340 0.66 0.605392
Target:  5'- gCGCCGUGCauucgcuuGCcGUCCucCGCCa -3'
miRNA:   3'- aGUGGCACGgucu----CGuCAGGuuGCGG- -5'
11500 3' -56.3 NC_003085.1 + 11064 0.66 0.594411
Target:  5'- cCAUCGUGCCGGuGCccGUaCUGGgGCCa -3'
miRNA:   3'- aGUGGCACGGUCuCGu-CA-GGUUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.