miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11500 3' -56.3 NC_003085.1 + 25292 0.68 0.487669
Target:  5'- cUCACCGcgacgGCCGGccAGguGgaCGACGCCg -3'
miRNA:   3'- -AGUGGCa----CGGUC--UCguCagGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 15189 0.68 0.487669
Target:  5'- -gGCUGaGCCGGuGCg--CCAGCGCCg -3'
miRNA:   3'- agUGGCaCGGUCuCGucaGGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 16600 0.68 0.487669
Target:  5'- gCGCUGgGCCucccGGGCGGUCCcgcGGCGCg -3'
miRNA:   3'- aGUGGCaCGGu---CUCGUCAGG---UUGCGg -5'
11500 3' -56.3 NC_003085.1 + 37203 0.68 0.484593
Target:  5'- uUCACgGcGCCAGcggccuucaauucuGGCGGcCCAGcCGCCg -3'
miRNA:   3'- -AGUGgCaCGGUC--------------UCGUCaGGUU-GCGG- -5'
11500 3' -56.3 NC_003085.1 + 36440 0.68 0.477454
Target:  5'- cUCACCGUGCgGaGGGCGGcgccUCAugGCg -3'
miRNA:   3'- -AGUGGCACGgU-CUCGUCa---GGUugCGg -5'
11500 3' -56.3 NC_003085.1 + 14759 0.68 0.477454
Target:  5'- cCGCCGUgGCCAu-GCAa-CCGGCGCCu -3'
miRNA:   3'- aGUGGCA-CGGUcuCGUcaGGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 18214 0.68 0.477454
Target:  5'- cCAUCGUGCCAGGGaCAaUCaCGcgcucaggcgacACGCCg -3'
miRNA:   3'- aGUGGCACGGUCUC-GUcAG-GU------------UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 23036 0.68 0.477454
Target:  5'- cCACCGUGCCAGcggacgucAGCaccuGGagCAACuGCCa -3'
miRNA:   3'- aGUGGCACGGUC--------UCG----UCagGUUG-CGG- -5'
11500 3' -56.3 NC_003085.1 + 6594 0.68 0.476439
Target:  5'- cUUGCCGUGgUgcgucagcagaugGGGGUccucaAGUCCGGCGCCg -3'
miRNA:   3'- -AGUGGCACgG-------------UCUCG-----UCAGGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 29044 0.69 0.467347
Target:  5'- aCGCCGU-CCAGcAGCAGUuggccaCCAGCcugaGCCa -3'
miRNA:   3'- aGUGGCAcGGUC-UCGUCA------GGUUG----CGG- -5'
11500 3' -56.3 NC_003085.1 + 22985 0.69 0.467347
Target:  5'- cCACCcccaagcaGCCAGAggugcgcgcgccGCAGUCCuGGCGCCc -3'
miRNA:   3'- aGUGGca------CGGUCU------------CGUCAGG-UUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 32317 0.69 0.467347
Target:  5'- cUCAgCGcGCCAGuAGCAgacgccGUCCAGUGCCu -3'
miRNA:   3'- -AGUgGCaCGGUC-UCGU------CAGGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 21921 0.69 0.467347
Target:  5'- gUCACCGccGCCGGAGauggccacgaGGgagucaucaugCCGGCGCCg -3'
miRNA:   3'- -AGUGGCa-CGGUCUCg---------UCa----------GGUUGCGG- -5'
11500 3' -56.3 NC_003085.1 + 31889 0.69 0.467347
Target:  5'- gUCACCccgaaGCCGGAGagcaGGUCCAcgaaGCCg -3'
miRNA:   3'- -AGUGGca---CGGUCUCg---UCAGGUug--CGG- -5'
11500 3' -56.3 NC_003085.1 + 17625 0.69 0.457351
Target:  5'- gUCG-CGUGCCGGAGCA--CCuGCGCa -3'
miRNA:   3'- -AGUgGCACGGUCUCGUcaGGuUGCGg -5'
11500 3' -56.3 NC_003085.1 + 26793 0.69 0.456358
Target:  5'- gCGCCaacGUGCCGGAGaCGGgauucggCCAgugaugccccugcGCGCCa -3'
miRNA:   3'- aGUGG---CACGGUCUC-GUCa------GGU-------------UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 30013 0.69 0.447471
Target:  5'- cCGgUGUGCCAcGGGUugguGUCCAuccacACGCCg -3'
miRNA:   3'- aGUgGCACGGU-CUCGu---CAGGU-----UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 1574 0.69 0.437711
Target:  5'- aCACUG-GCCagAGAGCAGgCCGcacGCGCUg -3'
miRNA:   3'- aGUGGCaCGG--UCUCGUCaGGU---UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 39887 0.69 0.428073
Target:  5'- aCGCCgGUGCuCGGcggcGGCAGgCCAaACGCCg -3'
miRNA:   3'- aGUGG-CACG-GUC----UCGUCaGGU-UGCGG- -5'
11500 3' -56.3 NC_003085.1 + 20846 0.69 0.418563
Target:  5'- -gGCCG-GCCGcAGCAG-CgAGCGCCa -3'
miRNA:   3'- agUGGCaCGGUcUCGUCaGgUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.