miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11501 3' -54.2 NC_003085.1 + 26088 0.68 0.585782
Target:  5'- cACG-GUgacgCAUGGCCuGGGaCACGGCu- -3'
miRNA:   3'- -UGCuCAa---GUACCGGuUCC-GUGUCGug -5'
11501 3' -54.2 NC_003085.1 + 33201 0.69 0.530037
Target:  5'- aGCGGGcgUCcuggaGGCgGcGGCGCAGCACg -3'
miRNA:   3'- -UGCUCa-AGua---CCGgUuCCGUGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 40718 0.69 0.508265
Target:  5'- gACGAGccgCuUGGCCAcgaAGGCGCgcagguAGCACu -3'
miRNA:   3'- -UGCUCaa-GuACCGGU---UCCGUG------UCGUG- -5'
11501 3' -54.2 NC_003085.1 + 40500 0.7 0.476347
Target:  5'- cGCGAGgcCGcGGCCcuuGGCcCAGCGCa -3'
miRNA:   3'- -UGCUCaaGUaCCGGuu-CCGuGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 41803 0.71 0.425497
Target:  5'- cACGGaUUCGUGGCCcAGGacuCGGCGCc -3'
miRNA:   3'- -UGCUcAAGUACCGGuUCCgu-GUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 19680 0.72 0.351295
Target:  5'- gACGAGaagCAUGccGCCAGGGC-CAGUGCg -3'
miRNA:   3'- -UGCUCaa-GUAC--CGGUUCCGuGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 5318 0.74 0.272151
Target:  5'- cGCGAGcgCGUGGCCAcgcuggAGGCGaaguCAGCAa -3'
miRNA:   3'- -UGCUCaaGUACCGGU------UCCGU----GUCGUg -5'
11501 3' -54.2 NC_003085.1 + 627 0.74 0.272151
Target:  5'- gGCGGGUUgugcUGcGCCAAGGCGCucGGCGCg -3'
miRNA:   3'- -UGCUCAAgu--AC-CGGUUCCGUG--UCGUG- -5'
11501 3' -54.2 NC_003085.1 + 25629 0.68 0.561061
Target:  5'- aGCGAGUg---GGCCGAGGCucucgcugacuuCGGUGCu -3'
miRNA:   3'- -UGCUCAaguaCCGGUUCCGu-----------GUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 22621 0.68 0.563298
Target:  5'- uCGAGg--GUGGCgGGGGCACacgccuGGCGCg -3'
miRNA:   3'- uGCUCaagUACCGgUUCCGUG------UCGUG- -5'
11501 3' -54.2 NC_003085.1 + 6790 0.68 0.563298
Target:  5'- gACGAGUaCcgGGCCc--GCACGGCGg -3'
miRNA:   3'- -UGCUCAaGuaCCGGuucCGUGUCGUg -5'
11501 3' -54.2 NC_003085.1 + 12710 0.67 0.619793
Target:  5'- gGCGAGgcCGgcGGCCGAGGgGaggUAGCGCa -3'
miRNA:   3'- -UGCUCaaGUa-CCGGUUCCgU---GUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 8553 0.67 0.631167
Target:  5'- gGCGAGcucgUCAcGGCaggucuuGAGGuCGCGGCGCa -3'
miRNA:   3'- -UGCUCa---AGUaCCGg------UUCC-GUGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 40558 0.66 0.67656
Target:  5'- uCGAGgcgCAaGGCCuugguGGCGguGCGCa -3'
miRNA:   3'- uGCUCaa-GUaCCGGuu---CCGUguCGUG- -5'
11501 3' -54.2 NC_003085.1 + 48668 0.66 0.699033
Target:  5'- gACGuccacCGUGGCCuGGGGCcACAGCAg -3'
miRNA:   3'- -UGCucaa-GUACCGG-UUCCG-UGUCGUg -5'
11501 3' -54.2 NC_003085.1 + 46890 0.66 0.710172
Target:  5'- cCGcGUcgAUGGCgUAGGGUGCGGCACa -3'
miRNA:   3'- uGCuCAagUACCG-GUUCCGUGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 28152 0.66 0.717921
Target:  5'- gACGAGgucgauuuccuuguaCAgguccugGGCCAggacgaagucuGGGCGCGGCACc -3'
miRNA:   3'- -UGCUCaa-------------GUa------CCGGU-----------UCCGUGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 22965 0.66 0.717921
Target:  5'- gGCGAugUC--GGCCAcagacuccggcgugGGGUGCAGCACg -3'
miRNA:   3'- -UGCUcaAGuaCCGGU--------------UCCGUGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 7798 1.09 0.000948
Target:  5'- gACGAGUUCAUGGCCAAGGCACAGCACc -3'
miRNA:   3'- -UGCUCAAGUACCGGUUCCGUGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.