miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11501 3' -54.2 NC_003085.1 + 32053 0.66 0.721229
Target:  5'- gGCGAGU----GGCCuGGGGgACAGCAa -3'
miRNA:   3'- -UGCUCAaguaCCGG-UUCCgUGUCGUg -5'
11501 3' -54.2 NC_003085.1 + 20112 0.67 0.619793
Target:  5'- gGCGGGgcuggagUCc-GGCCuaGAGGCGCuGCGCa -3'
miRNA:   3'- -UGCUCa------AGuaCCGG--UUCCGUGuCGUG- -5'
11501 3' -54.2 NC_003085.1 + 17454 0.67 0.631167
Target:  5'- gGCGAGUcccggcgcUCGuacUGGCgaAAGGCACucGCGCg -3'
miRNA:   3'- -UGCUCA--------AGU---ACCGg-UUCCGUGu-CGUG- -5'
11501 3' -54.2 NC_003085.1 + 537 0.67 0.653906
Target:  5'- gACGAcGUUCGgcaGCCAGGGCGgGGUg- -3'
miRNA:   3'- -UGCU-CAAGUac-CGGUUCCGUgUCGug -5'
11501 3' -54.2 NC_003085.1 + 13596 0.66 0.67656
Target:  5'- -gGAGgcgcgcCAUGacGCCAAGGCACaaguggGGCACg -3'
miRNA:   3'- ugCUCaa----GUAC--CGGUUCCGUG------UCGUG- -5'
11501 3' -54.2 NC_003085.1 + 2475 0.66 0.687825
Target:  5'- gACGcauAGU--GUGGCCAucaGCGCGGCGCu -3'
miRNA:   3'- -UGC---UCAagUACCGGUuc-CGUGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 41118 0.66 0.710172
Target:  5'- -gGAGgccCA-GGCCGA-GCGCGGCACc -3'
miRNA:   3'- ugCUCaa-GUaCCGGUUcCGUGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 12256 0.66 0.710172
Target:  5'- aACGAGUUCAUGcGCgAccGGUGCAuggaacucGCACg -3'
miRNA:   3'- -UGCUCAAGUAC-CGgUu-CCGUGU--------CGUG- -5'
11501 3' -54.2 NC_003085.1 + 42888 0.66 0.710172
Target:  5'- uCGAGggUGaGGCCGAGGUcCuGCGCg -3'
miRNA:   3'- uGCUCaaGUaCCGGUUCCGuGuCGUG- -5'
11501 3' -54.2 NC_003085.1 + 8066 0.67 0.619793
Target:  5'- cCGAGUcaggCAUGGCCGGuacauGaGCGgAGCGCa -3'
miRNA:   3'- uGCUCAa---GUACCGGUU-----C-CGUgUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 1300 0.67 0.608431
Target:  5'- -gGAGUUCucccgcGUGGCCGcgaAGGC-UGGCACu -3'
miRNA:   3'- ugCUCAAG------UACCGGU---UCCGuGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 26088 0.68 0.585782
Target:  5'- cACG-GUgacgCAUGGCCuGGGaCACGGCu- -3'
miRNA:   3'- -UGCuCAa---GUACCGGuUCC-GUGUCGug -5'
11501 3' -54.2 NC_003085.1 + 10554 0.74 0.262984
Target:  5'- cGCGAGUggCA-GGCgCAagaggcgaaggagcGGGCGCAGCACg -3'
miRNA:   3'- -UGCUCAa-GUaCCG-GU--------------UCCGUGUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 17194 0.73 0.286754
Target:  5'- gACGAGUcCcgGGCCAccgAGGcCugGGCGCu -3'
miRNA:   3'- -UGCUCAaGuaCCGGU---UCC-GugUCGUG- -5'
11501 3' -54.2 NC_003085.1 + 13548 0.72 0.334238
Target:  5'- gACGGGUUCAgcaCCGAGGCGagcaaGGCGCg -3'
miRNA:   3'- -UGCUCAAGUaccGGUUCCGUg----UCGUG- -5'
11501 3' -54.2 NC_003085.1 + 22188 0.71 0.406079
Target:  5'- gGCGaAGgugCA-GGCCGAGGUGCAGgGCg -3'
miRNA:   3'- -UGC-UCaa-GUaCCGGUUCCGUGUCgUG- -5'
11501 3' -54.2 NC_003085.1 + 34095 0.71 0.425497
Target:  5'- gGCGGGUUCgGUGGCguCAGGGcCACcGCAUg -3'
miRNA:   3'- -UGCUCAAG-UACCG--GUUCC-GUGuCGUG- -5'
11501 3' -54.2 NC_003085.1 + 34704 0.69 0.49752
Target:  5'- gGCGccGGUUgCAUGGCCAcggcGGCGCguGGCAUa -3'
miRNA:   3'- -UGC--UCAA-GUACCGGUu---CCGUG--UCGUG- -5'
11501 3' -54.2 NC_003085.1 + 23417 0.69 0.508265
Target:  5'- aGCGAG-UCAUGcagcgcuucGCCcagcAGGCGCAGCAg -3'
miRNA:   3'- -UGCUCaAGUAC---------CGGu---UCCGUGUCGUg -5'
11501 3' -54.2 NC_003085.1 + 34777 0.69 0.519105
Target:  5'- uCGGGUUC--GGC--AGGCGCAGUACg -3'
miRNA:   3'- uGCUCAAGuaCCGguUCCGUGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.