Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 7798 | 1.09 | 0.000948 |
Target: 5'- gACGAGUUCAUGGCCAAGGCACAGCACc -3' miRNA: 3'- -UGCUCAAGUACCGGUUCCGUGUCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 11896 | 0.81 | 0.090721 |
Target: 5'- cCGAGUUCAUGGCC-AGGCGCucCACg -3' miRNA: 3'- uGCUCAAGUACCGGuUCCGUGucGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 10554 | 0.74 | 0.262984 |
Target: 5'- cGCGAGUggCA-GGCgCAagaggcgaaggagcGGGCGCAGCACg -3' miRNA: 3'- -UGCUCAa-GUaCCG-GU--------------UCCGUGUCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 5318 | 0.74 | 0.272151 |
Target: 5'- cGCGAGcgCGUGGCCAcgcuggAGGCGaaguCAGCAa -3' miRNA: 3'- -UGCUCaaGUACCGGU------UCCGU----GUCGUg -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 627 | 0.74 | 0.272151 |
Target: 5'- gGCGGGUUgugcUGcGCCAAGGCGCucGGCGCg -3' miRNA: 3'- -UGCUCAAgu--AC-CGGUUCCGUG--UCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 17194 | 0.73 | 0.286754 |
Target: 5'- gACGAGUcCcgGGCCAccgAGGcCugGGCGCu -3' miRNA: 3'- -UGCUCAaGuaCCGGU---UCC-GugUCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 13548 | 0.72 | 0.334238 |
Target: 5'- gACGGGUUCAgcaCCGAGGCGagcaaGGCGCg -3' miRNA: 3'- -UGCUCAAGUaccGGUUCCGUg----UCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 19680 | 0.72 | 0.351295 |
Target: 5'- gACGAGaagCAUGccGCCAGGGC-CAGUGCg -3' miRNA: 3'- -UGCUCaa-GUAC--CGGUUCCGuGUCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 22188 | 0.71 | 0.406079 |
Target: 5'- gGCGaAGgugCA-GGCCGAGGUGCAGgGCg -3' miRNA: 3'- -UGC-UCaa-GUaCCGGUUCCGUGUCgUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 41803 | 0.71 | 0.425497 |
Target: 5'- cACGGaUUCGUGGCCcAGGacuCGGCGCc -3' miRNA: 3'- -UGCUcAAGUACCGGuUCCgu-GUCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 34095 | 0.71 | 0.425497 |
Target: 5'- gGCGGGUUCgGUGGCguCAGGGcCACcGCAUg -3' miRNA: 3'- -UGCUCAAG-UACCG--GUUCC-GUGuCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 40500 | 0.7 | 0.476347 |
Target: 5'- cGCGAGgcCGcGGCCcuuGGCcCAGCGCa -3' miRNA: 3'- -UGCUCaaGUaCCGGuu-CCGuGUCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 34704 | 0.69 | 0.49752 |
Target: 5'- gGCGccGGUUgCAUGGCCAcggcGGCGCguGGCAUa -3' miRNA: 3'- -UGC--UCAA-GUACCGGUu---CCGUG--UCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 40718 | 0.69 | 0.508265 |
Target: 5'- gACGAGccgCuUGGCCAcgaAGGCGCgcagguAGCACu -3' miRNA: 3'- -UGCUCaa-GuACCGGU---UCCGUG------UCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 23417 | 0.69 | 0.508265 |
Target: 5'- aGCGAG-UCAUGcagcgcuucGCCcagcAGGCGCAGCAg -3' miRNA: 3'- -UGCUCaAGUAC---------CGGu---UCCGUGUCGUg -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 34777 | 0.69 | 0.519105 |
Target: 5'- uCGGGUUC--GGC--AGGCGCAGUACg -3' miRNA: 3'- uGCUCAAGuaCCGguUCCGUGUCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 33201 | 0.69 | 0.530037 |
Target: 5'- aGCGGGcgUCcuggaGGCgGcGGCGCAGCACg -3' miRNA: 3'- -UGCUCa-AGua---CCGgUuCCGUGUCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 25629 | 0.68 | 0.561061 |
Target: 5'- aGCGAGUg---GGCCGAGGCucucgcugacuuCGGUGCu -3' miRNA: 3'- -UGCUCAaguaCCGGUUCCGu-----------GUCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 22621 | 0.68 | 0.563298 |
Target: 5'- uCGAGg--GUGGCgGGGGCACacgccuGGCGCg -3' miRNA: 3'- uGCUCaagUACCGgUUCCGUG------UCGUG- -5' |
|||||||
11501 | 3' | -54.2 | NC_003085.1 | + | 6790 | 0.68 | 0.563298 |
Target: 5'- gACGAGUaCcgGGCCc--GCACGGCGg -3' miRNA: 3'- -UGCUCAaGuaCCGGuucCGUGUCGUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home